Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4066 ATGGAGAAGAGCGAAACGACGCTGGATTTAGCTAATCGGAAATTTGCGCGGCAATTGGATTTCGCCGCCGCATGTGGAGGTCCGTCGTACCTGACATTGTCGCCACCGACGCCGCAGTCACTGTCAAAAACCATTCCACGACCTCCGACACCGTCGTATTTGCCACCTCCGGCGCAAATGCATTTGGATTTTCAGTCACCAGTGAGACGGCCGTGGAAACAATCACCACCACAGTGGCAGCAGCAGAGAACGTCACAGTCTCCGCCGGTGATGCCGCATTTTCAATCACCGCGGCCGCAGTTAGTTTCGCCGGTTCATCGATTACCATACTCCACACCAAAGCTTCCGGTGAAGAGGTTTCAAGCGCTAAACGAGTCTCCTAGCCCTAGATCACAGTCTCAAAATAAAGCAGGGTTAAAGGACAACACTCTAAAGAAGCAAAAACGATGTAACTGCAAAAATTCCAAATGCCTTAAACTGTACTGTGAGTGCTATGCAGCTGGGATCTATTGTGATGGTTGCAACTGTCAAAATTGTCATAATAATCTGAACAATGAGGCTGCCCGAAAGGAGGCAATTGGAATGACACTGGAAAAAAATCCAAATGCTTTCAGACCAAAAATTGCAAGCAGTCCGCAAAAACCAGAAGTTTCTATGGAGGAAGTGTCTGAAATTCAATTGATAGGAAGGCACAATAAAGGATGTCACTGCAAGAAAGGTTGCCTAAAGAAGTATTGTGAGTGTTTCCATGCCAACGTCCTCTGCTCTGAAAATTGTAAATGCATTGACTGCAAGAATTTTGAAGGAAGTGACGTATGGAGAATAGTTTTACAAGAAGAGTGTAGTCTAGTTCAAATCAGACAAGCAACTAATGCTGCCATTAACGGAGCAGTTGGATTTGGACCCTCCATCTCTGGAACCCATATAACACCCAAGAAGAGAAAAATCCAGGAAAGTTTTTCTGGCAAATCACTCACAGATCAACCTGTTAGCATGACTGCTCAACACCAACGGGAACTTGATCCTATAGCTTCATCTCCCTTATCCCTGTCAGCTTCCTTTGTTTCCGACACTGCCTATAAAAGAATTTCAAGACCTAAATTCAGGTCTGTGCTGGCTGATGTCCTCCAGACACAGAATGTGAAAAATCTTTGTTCACTTTTAGTTGTTCTCTCCAAAGAAGCTGCAAAGACAAATGCAGAAATGAGAGGGAAAGCTGCTAGGAAAATAAAGACCGAGAAATATGAAGCTTCTATTGCTTCATCATCTCAATTGCTGCAAGACAGTAGAAATGTTGTCAGGGCTTCGGAGAATCATGCAAATAAAGATGTAGCAGATGCAGTAGATATTGACATTCATAATAGGCCACTGTCACCAGAAACACTTAAATTGATGTGTGATGAACTGGATGAGATGTTTTTCGGTAATGGTTCTGCAAATGGAGTTGCAATTGACAATGCTTATCAGAACATGATTCAAAAGTCTTCCAACTCTGATGGATACACTGCTGTTTATGCAGAGCAGGAAAGGCTTATCCTGACCAAGTTCAGGGATGTTCTTGGAGAACTGATTATTCTTGGTAGCATTAAAGAAACAATGCACTCTTCATCAGTGAAGAAAGATGTTAGTATCGAGAAAACACCTAAAAACAATGGTGATAGTGGTGCTGAAACTAAGGGGATTCTTCTCAACAACTGCACTGCCAATTGCTCAATCCCAGTGGCTACCTATGCAAGAACTAATGGACATGATACTACTGATCTTTCATTGAGGTTGCCTGCCGATTGA 1788 0.4323 MEKSETTLDLANRKFARQLDFAAACGGPSYLTLSPPTPQSLSKTIPRPPTPSYLPPPAQMHLDFQSPVRRPWKQSPPQWQQQRTSQSPPVMPHFQSPRPQLVSPVHRLPYSTPKLPVKRFQALNESPSPRSQSQNKAGLKDNTLKKQKRCNCKNSKCLKLYCECYAAGIYCDGCNCQNCHNNLNNEAARKEAIGMTLEKNPNAFRPKIASSPQKPEVSMEEVSEIQLIGRHNKGCHCKKGCLKKYCECFHANVLCSENCKCIDCKNFEGSDVWRIVLQEECSLVQIRQATNAAINGAVGFGPSISGTHITPKKRKIQESFSGKSLTDQPVSMTAQHQRELDPIASSPLSLSASFVSDTAYKRISRPKFRSVLADVLQTQNVKNLCSLLVVLSKEAAKTNAEMRGKAARKIKTEKYEASIASSSQLLQDSRNVVRASENHANKDVADAVDIDIHNRPLSPETLKLMCDELDEMFFGNGSANGVAIDNAYQNMIQKSSNSDGYTAVYAEQERLILTKFRDVLGELIILGSIKETMHSSSVKKDVSIEKTPKNNGDSGAETKGILLNNCTANCSIPVATYARTNGHDTTDLSLRLPAD* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4066 595 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 147 182 IPR005172 -
Mtr3g4066 595 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 233 266 IPR005172 -
Mtr3g4066 595 PANTHER TESMIN/TSO1-RELATED 1 565 IPR028307 -
Mtr3g4066 595 MobiDBLite consensus disorder prediction 71 91 - -
Mtr3g4066 595 MobiDBLite consensus disorder prediction 41 56 - -
Mtr3g4066 595 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 1 565 - -
Mtr3g4066 595 SMART CXC_2 145 185 IPR033467 -
Mtr3g4066 595 SMART CXC_2 230 270 IPR033467 -
Mtr3g4066 595 MobiDBLite consensus disorder prediction 33 102 - -
Mtr3g4066 595 ProSiteProfiles CRC domain profile. 146 269 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4066 Mtr-Chr3 54430622 54436615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4066 13 532 CPP Transcription Factor Family AT4G29000 40.109 7.20e-111 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Mtr3g4066 TCR 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4066 - K21776 gmx:100811459 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4066 3 54430622 54436615 Mtr3g4066 3 54430622 54436615 ECH