Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4056 ATGGGAAGTGAGTCGACAATTCCTGCTTTATCAGATGGCGTACAGAAAATTAGAGCATTACATGGGAGGACTACTGGCCCTACAAGGCGATCCACTAAAGGACAATGGACACCCGAGGAGGATAATATATTGAGGAAGGCTGTTGAGCGTTTTCAAGGAAAAAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTACAATGCCTGCATAGGTGGCAAAAAGTCTTAAATCCAGAACTTATCAAAGGTCCTTGGTCCAAAGAGGAAGATGAAACAATTGTTGATTTGGTAAACAAATATGGGCCTAAAAAGTGGTCTACTATAGCACAACATTTACCTGGACGTATCGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTTCTATAAACAAAGAAGCATGGACGCAGGAAGAAGAGTTGGCTCTAATACATGCTCATCAGATATATGGGAATAGATGGGCAGAGTTATCAAAGTTTTTGCCTGGAAGGACAGACAATGCTATAAAGAACCACTGGAATAGTTCTGTTAAGAAAAAATTGGATTCCTACTTGGCGTCAGGCTTGCTTGCTCAGTTTCAAAATGTCCCACTTGTTGGAAATCCGAATCAACCTATTGCTTCATCCTCTGCAAGGTTGCAGTTTAGTGTAGATGATAATGGTCCTAGGGGCACAGAAGGTGAGGAAGTTTCACAGTGTAGCCAGGAGTCCATTAATGCTAGTCACTTTCCGTCTGGCAGAGAGTTGAGCATTGCCGTTATACAAAATGTGGAGGAGTACAGGCAAAATGAAGAATCTAATCAAGCATCATGTTCAGAGCCATATTACATGTCTCTGGATGGTGTTACTCTCCAAGAGGTTTGCTCCTCTCAATTTCTTGAGCAAAAATATTCAAACGAACCTGGGAGTTCCTCCGCAAATGTGGACTGCCAATTTAATTTACATGCTTTGCCCACCTCACTGGACTTTGGGCAGGAATCGACGCAGTTGCAAAATGATTCTTTAGCTTCTGGTGAAAACATGATGATTGTTCCATATGAATATCGGCCTTCATCTATGGGCAATGCTAAAGGAGAACAAAACATGTTGATAACTGATGATGAATGTTGCAGATTCCTATTTTCAGAGGCAATGAGCGATGAATGTTTTTCCTCTGGAGGAGTAAATAATGTTGACTTGTCTGGATACACTTCATCTCTTTGTCATTCGTCTTTACCATCTGATAGTAGGATGATAATGTCTACTGCCGAAGCAAATCAGTTGGTCGGCTCTGTGGATCAGCAATTTGACTCGAGGGAAGATGTTGTGAAAGATGATAGTTTAAAATTGGAGCCTGTAAGTAATTCTGGATGTGGATCAGATACGATGCAAACTTGCTATCCAATTGATGAAAAGCCAAATGTGCATACACAACAGGAGGAAACAGGAGGAACTCTATGTTATGAACCGCCCCGTTTTCCAAGCTTGGATATACCTTTCTTGAGCTGTGATCTTATACAATCTGGAGATATGCAGCAAGAATTTAGTCCCTTAGGTATCCGCCAGTTTATGATGTCTTCTATGAACTGTCTGACTCCTTTCAGATTGTGGGACTCACCTTCTCGCATTGATAGTCCGGACGCTTTGTTAAAAAGTGCTGCTAAAACTTTCACAAGTACACCGTCCATAATGAAGAAGAAGAAACGAAACCGAGAAAGAGACCTTTTATCTCCACTATCAGATAGAAGAATGGAGAAGAAACATGAGATTGACATGACGTCAACTTTGATTAGAAACTTTTCCCGTTTGGATGTCATGTTTGATGACAATGAGACTCAAGGTATTGAACATGATAAAGAAAATCGTGGACCAGCTTTTATGGTGGAGGATAAAAGTAACTCTGAGGAGAAGATTGAGCAGCCTCCACTTGATGCTGATTCTAAGATGAAGAATGATATTGATACCACTGCTGAAATTGTGCAACAGCCTTCTCGAGTTTTGATTGAACATGATATGAATGATCCATCGCTGTATTCTCCTAATCAAGTTGGTTTGAAATCAGACATAGTTCTAAGTTTAAGTGCTCGAAGTCATCAAAAATCAGTCTCAAGATTTAGCTCTCCTTGTGTTCGATTAAAGGAGCACGAAAGACTCTCAGTTTCTGTTACTTGTGTACAATCCATCTGTTCATCATCAATCCCAGGAGAGAATATGGATGATCAAACCGGAAATGATGATGGTTTTGAAACAAATAACATTTTTGGAGGAATGCCTTTTAGGAAAAGCTTTGAATCACCTTCAGCATGGAAATCCCCTTTGTTTATAAACACCTTTTTGTCTAGTCCTAGGATTGATGCTGAAATTACTATCGAGGACTACGGATGTTTCTTTAGCCCGGGTGATAAAAGCAGCTATGATGCACTTGGATGGATTAAGCAGATTGGTGAACACACTGCTGCTCAATATGCCAATGCTCTAGAGGCTTTAGAAAATGAAACTCCTAAGGCACTACCAAATGATGCCTCTGGAGACGACCAGGAAAACAACGATCCTCATAATCAGTCTGGGAACCATTCTAAGTCGCCTTCAAATGCTTCGGTGGAGCGACGCATGCTTGACTTCAGCGAATGTGGAACTCCAAACAAAGGTGATAAGGGCAAATCCTCAGCTATGAGTGTTTCAAGTCCTTCTTCGTATTTGTTGAAGGGCTGTAGATAG 2712 0.4082 MGSESTIPALSDGVQKIRALHGRTTGPTRRSTKGQWTPEEDNILRKAVERFQGKNWKKIAECFKDRTDVQCLHRWQKVLNPELIKGPWSKEEDETIVDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQEEELALIHAHQIYGNRWAELSKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLAQFQNVPLVGNPNQPIASSSARLQFSVDDNGPRGTEGEEVSQCSQESINASHFPSGRELSIAVIQNVEEYRQNEESNQASCSEPYYMSLDGVTLQEVCSSQFLEQKYSNEPGSSSANVDCQFNLHALPTSLDFGQESTQLQNDSLASGENMMIVPYEYRPSSMGNAKGEQNMLITDDECCRFLFSEAMSDECFSSGGVNNVDLSGYTSSLCHSSLPSDSRMIMSTAEANQLVGSVDQQFDSREDVVKDDSLKLEPVSNSGCGSDTMQTCYPIDEKPNVHTQQEETGGTLCYEPPRFPSLDIPFLSCDLIQSGDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRIDSPDALLKSAAKTFTSTPSIMKKKKRNRERDLLSPLSDRRMEKKHEIDMTSTLIRNFSRLDVMFDDNETQGIEHDKENRGPAFMVEDKSNSEEKIEQPPLDADSKMKNDIDTTAEIVQQPSRVLIEHDMNDPSLYSPNQVGLKSDIVLSLSARSHQKSVSRFSSPCVRLKEHERLSVSVTCVQSICSSSIPGENMDDQTGNDDGFETNNIFGGMPFRKSFESPSAWKSPLFINTFLSSPRIDAEITIEDYGCFFSPGDKSSYDALGWIKQIGEHTAAQYANALEALENETPKALPNDASGDDQENNDPHNQSGNHSKSPSNASVERRMLDFSECGTPNKGDKGKSSAMSVSSPSSYLLKGCR* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4056 903 SUPERFAMILY Homeodomain-like 82 178 IPR009057 -
Mtr3g4056 903 MobiDBLite consensus disorder prediction 840 866 - -
Mtr3g4056 903 PANTHER TRANSCRIPTION REPRESSOR MYB5 5 412 - -
Mtr3g4056 903 PANTHER TRANSCRIPTION REPRESSOR MYB5 492 612 - -
Mtr3g4056 903 PANTHER TRANSCRIPTION REPRESSOR MYB5 697 902 - -
Mtr3g4056 903 Gene3D - 32 84 - -
Mtr3g4056 903 MobiDBLite consensus disorder prediction 628 647 - -
Mtr3g4056 903 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 186 IPR017930 -
Mtr3g4056 903 PANTHER MYB PROTEIN-RELATED 5 412 - -
Mtr3g4056 903 PANTHER MYB PROTEIN-RELATED 697 902 - -
Mtr3g4056 903 PANTHER MYB PROTEIN-RELATED 492 612 - -
Mtr3g4056 903 Gene3D - 85 136 - -
Mtr3g4056 903 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 79 IPR017930 -
Mtr3g4056 903 ProSiteProfiles Myb-like domain profile. 80 131 IPR001005 -
Mtr3g4056 903 MobiDBLite consensus disorder prediction 832 903 - -
Mtr3g4056 903 CDD SANT 36 79 IPR001005 -
Mtr3g4056 903 Gene3D - 138 197 - -
Mtr3g4056 903 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 135 IPR017930 -
Mtr3g4056 903 ProSiteProfiles Myb-like domain profile. 28 79 IPR001005 -
Mtr3g4056 903 SUPERFAMILY Homeodomain-like 34 89 IPR009057 -
Mtr3g4056 903 MobiDBLite consensus disorder prediction 883 897 - -
Mtr3g4056 903 CDD SANT 139 179 IPR001005 -
Mtr3g4056 903 Coils Coil 810 830 - -
Mtr3g4056 903 ProSiteProfiles Myb-like domain profile. 132 182 IPR001005 -
Mtr3g4056 903 SMART sant 84 133 IPR001005 -
Mtr3g4056 903 SMART sant 136 184 IPR001005 -
Mtr3g4056 903 SMART sant 32 81 IPR001005 -
Mtr3g4056 903 MobiDBLite consensus disorder prediction 18 37 - -
Mtr3g4056 903 CDD SANT 87 131 IPR001005 -
Mtr3g4056 903 Pfam Myb-like DNA-binding domain 137 179 IPR001005 -
Mtr3g4056 903 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Mtr3g4056 903 Pfam Myb-like DNA-binding domain 85 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4056 Mtr-Chr3 54295723 54301930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4056 441 903 MYB Transcription Factor Family AT4G32730 40.726 3.95e-88 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g4056 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4056 - K09420 cam:101506533 1486.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4056 3 54295723 54301930 Mtr3g4056 3 54295723 54301930 ECH
Mtr1g0105 1 1141340 1144100 Mtr3g4056 3 54295723 54301930 PCT