Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4054 ATGACTGGAGTTCAAGAGGACCGTATTTCACCTTTTTCAGCAGATGAGAAAGAACAAGCATTGCTTGCTTTGTGTTCTGATGAATCAGTTTCCTCTAAGAGGCCTGATAATGCATCAATGGAAGCAATTGGCCAATTAGGCGAGCATATCATACCACAGAAACATTTGTCTAAGTATATAATGGGAATCAAGAAGGTTTCAAATCCCAAGTCAGCCAGGAGATCAAGGCGGAGAAAACAAGCGCATTTGTTTGAACTTGAGTCTCAGGTTGGAAAACTGAAACTGGAAAATGCAACCCTATACAAACAGTTTACGGATGCTAGTCAACAATTTCACGAGGCTGATACAAATAACCAAGTGCTAAAATCAGATGTAGAAGCTTTGAGAGCTAAGGTATACGGAGAGCTTATGTTATAG 417 0.4005 MTGVQEDRISPFSADEKEQALLALCSDESVSSKRPDNASMEAIGQLGEHIIPQKHLSKYIMGIKKVSNPKSARRSRRRKQAHLFELESQVGKLKLENATLYKQFTDASQQFHEADTNNQVLKSDVEALRAKVYGELML* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4054 138 Pfam bZIP transcription factor 64 105 IPR004827 GO:0003700|GO:0006355
Mtr3g4054 138 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 64 78 IPR004827 GO:0003700|GO:0006355
Mtr3g4054 138 PANTHER BASIC LEUCINE ZIPPER 9 64 132 - -
Mtr3g4054 138 CDD bZIP_plant_GBF1 64 112 IPR045314 GO:0003700|GO:0006355
Mtr3g4054 138 SMART brlzneu 54 120 IPR004827 GO:0003700|GO:0006355
Mtr3g4054 138 Gene3D - 63 115 - -
Mtr3g4054 138 PANTHER BASIC LEUCINE ZIPPER 63 64 132 - -
Mtr3g4054 138 SUPERFAMILY Leucine zipper domain 64 111 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4054 Mtr-Chr3 54264718 54266039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4054 67 132 bZIP Transcription Factor Family AT5G24800 66.667 4.97e-23 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Mtr3g4054 bZIP_1 1.9e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4054 K25784 - mtr:MTR_3g109982 219.55