Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4040 ATGGTATCTAATTTCATGGAAAGGGAACGAACTCGGAAACGACCTCGTCTCGCTTGGGATGCAGCAGCAGCTCCACCTCCTTCAATTCCAAAGGTGCCCAGAAATTTGGCAGTGGTCGGTGACGATGGAATCGAAAGAAAGTATGCTTCGCCTCCGAGAAGAGACGACGATCGTGATGGCCATTATGTCTTTAATCTCGGCGAAAATCTCACTCCTAGATATAAAATTCTCAGCAAAATGGGTGAAGGCACCTTTGGTCGAGTTTTGGAATGTTGGGATCGTCAAACCAGAGATTATGTAGCTATCAAGGTAATTAGAAGCATCAAGAAGTATCGCGATGCAGCAATGATCGAGGTTGATGTGCTTGAACGTCTTGTGAAGAGTGATGTGGGATGCTCAAGCTGTGTACAGATCCTGAATTGGTTCGATTACCGGAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGTTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATTTATGCATGAACTACGCCTAATCCACACCGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGACTATGTAAAGCTTCCTAGTTGTAAGAGGGTTATGTCAGATGAAACGCAATTTAGGTGCTTGCCTAAGTCTAGTGCGATTAAGCTGATTGATTTTGGCAGTACTGCATTTGCAAATCAGAGTCATAGCTCCATTGTTTCTACAAGGCATTATAGAGCCCCTGAGGTTATCTTAGGTCTAGGGTGGTCATCTCCGTGTGATTTGTGGAGTGTTGGATGCATTCTCATTGAGTTATGCACGGGAGGAGCATTGTTTCAGACTCATGAAAATTTGGAGCACCTGGCAATGATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGGTTCAAAGGTCTAAGGGTACGGAAAAATATTTCAAGCGTGGATCACGACTAAGATGGCCCGAAGGAGCTGTTTCAAGGGAGAGCATAAATGCAGTGAAGAAGCTTGGCGATCTTAAGGATATTATATCACGTCATGTTGAGTCGTCAAGGTCCTCATTAACTGATTTGTTGTATGGTTTATTAACATACGAACCATCCAAACGCATTACTGCTCGCCAAGCTCTTGATCATCCCTTCTTTAGGATTCCAACTTAA 1209 0.4309 MVSNFMERERTRKRPRLAWDAAAAPPPSIPKVPRNLAVVGDDGIERKYASPPRRDDDRDGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTRDYVAIKVIRSIKKYRDAAMIEVDVLERLVKSDVGCSSCVQILNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAFMHELRLIHTDLKPENILLVSSDYVKLPSCKRVMSDETQFRCLPKSSAIKLIDFGSTAFANQSHSSIVSTRHYRAPEVILGLGWSSPCDLWSVGCILIELCTGGALFQTHENLEHLAMMERVLGPLPEHMVQRSKGTEKYFKRGSRLRWPEGAVSRESINAVKKLGDLKDIISRHVESSRSSLTDLLYGLLTYEPSKRITARQALDHPFFRIPT* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4040 402 SUPERFAMILY Protein kinase-like (PK-like) 61 399 IPR011009 -
Mtr3g4040 402 Pfam Protein kinase domain 74 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g4040 402 MobiDBLite consensus disorder prediction 16 35 - -
Mtr3g4040 402 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 48 398 - -
Mtr3g4040 402 ProSiteProfiles Protein kinase domain profile. 74 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g4040 402 PANTHER BNAA07G37640D PROTEIN 48 398 - -
Mtr3g4040 402 CDD PKc_CLK 61 398 - -
Mtr3g4040 402 Gene3D Transferase(Phosphotransferase) domain 1 128 398 - -
Mtr3g4040 402 Gene3D Phosphorylase Kinase; domain 1 61 154 - -
Mtr3g4040 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Mtr3g4040 402 SMART serkin_6 74 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4040 Mtr-Chr3 54073420 54077933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4040 74 398 Core Cell Cycle Gene Families AT1G76540 26.471 2.29e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Mtr3g4040 Pkinase 2.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4040 K08287 - gmx:100782453 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4040 3 54073420 54077933 Mtr3g4040 3 54073420 54077933 ECH