Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4017 ATGCAACAGAGGCTAAAGTTGCAGCAACAACAACAACAACAAGCACTCATGCAGCAAGCTTTGCTTCAACAACAACAGATGTATCACCATCCTGGCATGCTCGCTGCTGCCGCCATGACCCAGATGGAGCCTGTACCAAGTGGAAATCTGCCTCCTGGTTTTGATGCTTCTGCATGCCGTAGCGTTTATGTAGGAAATATTCATGTAAACGTCACCGATAAACTTCTCGCAGAAGTTTTTCAGAGTGCCGGCCCTCTTGCTGGGTGCAAGCTCATACGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCCGCAGCGCTTGCAATAATGACATTACATGGACGGCAACTATATGGTCAAGCACTAAAGGTGAATTGGGCATATGCTAACAGCAGCAGGGAGGATACCTCAGGGCACTTCAATGTTTTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATACTACTTGTTCTGATGCTAGGGTTATGTGGGATCACAAAACTGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATAAATGATATGACAGGTAAATGGCTGGGAAATAGGCAAATAAGATGCAATTGGGCAACTAAAGGAGCTGGTGGCAGCTCAAATGAAGAGAAGATCAATGACAGCCAAAATGCTGTTGTACTCACAAATGGATCTTCAGATGGAGGTCAAGATAACAGCAACGAGGATGCTCCTGAAAACAATCCTTCATACACCACAGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCATTGTCAATTCCATGCATTGGGGGCTGGGGTACTTGAGGAGGTCCGAGTTCAGAGCGGCAAGGGTTTTGGATTTGTCAGATACAATACTCACGAGGAAGCAGCAATGGCCATTCAGATGGCTAATGGAAGACCGGTTCGTGGGAAGACTATGAAGTGTTCATGGGGTAGCAAACCAACTCCTCCTGGAACAGCTTCAAATCCATTACCTCCTCCTGCTGCACAACCATATCAAATACTTCCTACTGCAGGGATGAACCAAGGCTATACTGCCGCTGAGTTGTTGGCTTATCAGCGCCAGCTGGCCTTGAGTCAGGCCGCTGTTTCTGGCCTTTCAGGACAAGCTCTTCTTCAAATGTCTGGACAGCATGGCCTAGCTCCTGCTTCAATGGGTATAAACTCTGCGGCATCTCAAGCCATGTATGACGGATATGCTGGTAATTCGTCAAGACAGCAGCTTATGTACTATCGTTAA 1323 0.4626 MQQRLKLQQQQQQQALMQQALLQQQQMYHHPGMLAAAAMTQMEPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKPTPPGTASNPLPPPAAQPYQILPTAGMNQGYTAAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSAASQAMYDGYAGNSSRQQLMYYR* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4017 440 SUPERFAMILY RNA-binding domain, RBD 139 239 IPR035979 GO:0003676
Mtr3g4017 440 MobiDBLite consensus disorder prediction 242 266 - -
Mtr3g4017 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 134 IPR000504 GO:0003723
Mtr3g4017 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Mtr3g4017 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 341 IPR000504 GO:0003723
Mtr3g4017 440 SMART rrm1_1 61 130 IPR000504 GO:0003723
Mtr3g4017 440 SMART rrm1_1 268 337 IPR000504 GO:0003723
Mtr3g4017 440 SMART rrm1_1 146 219 IPR000504 GO:0003723
Mtr3g4017 440 SMART rrm2_1 146 219 IPR003954 GO:0003676
Mtr3g4017 440 SMART rrm2_1 268 337 IPR003954 GO:0003676
Mtr3g4017 440 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 12 437 - -
Mtr3g4017 440 CDD RRM2_PUB1 146 220 - -
Mtr3g4017 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 128 IPR000504 GO:0003723
Mtr3g4017 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 335 IPR000504 GO:0003723
Mtr3g4017 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 217 IPR000504 GO:0003723
Mtr3g4017 440 Gene3D - 144 224 IPR012677 -
Mtr3g4017 440 SUPERFAMILY RNA-binding domain, RBD 253 345 IPR035979 GO:0003676
Mtr3g4017 440 Gene3D - 245 345 IPR012677 -
Mtr3g4017 440 CDD RRM3_TIA1_like 267 341 - -
Mtr3g4017 440 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 12 437 - -
Mtr3g4017 440 Gene3D - 1 143 IPR012677 -
Mtr3g4017 440 MobiDBLite consensus disorder prediction 331 356 - -
Mtr3g4017 440 SUPERFAMILY RNA-binding domain, RBD 44 138 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4017 Mtr-Chr3 53903617 53914256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4017 49 341 Eukaryotic Initiation Factors Gene Family AT1G71770 26.316 6.06e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4017 K13201 - gmx:100790916 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4017 3 53903617 53914256 Mtr3g4017 3 53903617 53914256 ECH