Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4013 ATGGAGCTCAAAAATGAGAAACTAGTCAGGTTCTCCATTGATGGAAAGCATAACCTTGAGAAACCAATGTCAGTTTACAAGATTCAGAAAATTCTTAATCCGGAAGGCAAAATTAGTAGCATTGTTGATACTGATAAGAATGGAATGAATATCAAATTTCCAACTTTTGAAAAGTTTAAGGTTTTCCAAGAAAATCATGAACCATGGAAGAAGAGAATTCTTGATCCAGGAAGCGATATCTTTCTGGAATGGAAAAGGGCTTTCCTATGTTCTTGCATACTATCACTATTTGTTGATCCATTGTTTTTCTATCTACCATCTGTAGCAATATCAACTAATAAGAATTCATCATGCATGGTTACTGATTTGAATTTAGGAATTGTTGTCACATGTTTTCGGACATTTGCCGATGTTTTCTATCTGCTGAACATGGTCATAAAGTTTAGGACAGCCTTTGTGTCACCAAGTTCAAGGGTTTTCGGAAGGGGTGAACTTGTCATGGATCCCAGGTTGATTGCGAGACGGTATTTGAGATCGGAGTTTTTCCTAGATCTTTTTGCTGCATTGCCACTTCCCCAGATTGTGATTTGGTTTATTATGCCAGCAATTAGAAGCTCCCATGATGATCATACCAACAATGCTCTTGTACTGATTGTCCTGCTTCAATATGTCCCCAGATTGTATATGATTTTTCCATTAAGTTCTCAGATAGTTAAAGCTACTGGTGTTGTCACAAAGACGGCTTGGGCCGGAGCTGCTTACAATCTTTTACTTTACATGTTAGCAAGTCATGTCTTAGGGGCATCGTGGTATTTGTTGTCAATTGAAAGGCATGCTACTTGCTGGAAATCTGAATGCAGAAATGAAAACTTACCTGTGAAATGTATTCTTAACTACTTGGATTGCAGTACTATAAACGATGGCGATCGCGTGAAGTGGGCAAATACTACTTCTGTGTTTGGTAACTGCAATCCTGAAAGTAGCAAAGTTTTCAACTATGGAATTTTTGGAAATGCCGTGCAAAATAATGTTCTCTCCTCTATGTTTATAGAGAAGTATCTCTATTGTTTGTGGTGGGGGTTGCAGAACTTGAGTTCTTATGGCCAGAGTTTGACTACAAGCACATTTGTTTGGGAAACTGCATTTGCAATACTCATAGCTATCTTAGGTCTGGTTTTGTTTGCTCACTTAATCGGCAACATGCAGACCTATTTGGAATCTATTACTGTGAGGCTTGAAGAGTGGAGGCTCAAGCGACGTGACACAGAAGAATGGATGAAACACCGGCAACTCCCACAATTTCTCAGAGAGCGCGTCCGAAGATTTGTTCAGTACAAGTGGCTTGCAACTCGAGGTGTTGACGAAGAAACAATCCTGAGAGGCCTCCCTACAGACCTTCGTAGAGATATCCAACGCCACCTTTGCTTAGACCTTGTTCGACGTGTTCCCTTTTTCTCACAAATGGATGATCAACTACTTGATGCAATATGCGAGCGATTGGTATCATCCTTGAGTACTCAAGGCACATACATTGTCAGAGAAGGAGATCCAGTTACCGAGATGCTTTTTATCATCAGAGGGAGACTTGAAAGCTCAACCACAAATGGGGGCAGAACTGGTTTCTTTAACTCTATTACCTTAAAGCCTGGTGATTTCTGTGGAGAAGAGTTACTTGCTTGGGCATTGCTTCCAAAATCTACTCTCAACTTGCCTTCTTCTACGAGAACAGTTAAAGCTCTTGTTGAAGTTGAAGCCTTTGAACTTAGAGCAGAGGATCTTAAATTTGTCGCAAATCAGTTTCGACGTCTCCACAGCAAGAAGTTACAGCATACATTCCGTTTCTACTCTTACCATTGGAGGACGTGGGCTGCTTGTTTCATTCAGGCTGCTTGGCGCCGGTTCAAGAAGAGAGCATTGGCAAGTAGTCTTAGCTTGAGGGAATACAAGTCCTTCATTGATGAACAAGCAATATATCAAATGGAGGAACACGAGGAAGAAGAGCACCGCAGTTTGGTGAATTCAAACACCGCACAAGTAAAACAGAATCTAGGTGTCACTATACTGGCTTCAAGATTTGCTGCAAACACAAGGAAAGGGGTTCAGAAGATCAAGGATGCAGAGATGCCCAAGTTGCAAAAGCCTGAAGAGCCAGATTTTTCGGTAGAGCCTGAAGATGATTAA 2181 0.4099 MELKNEKLVRFSIDGKHNLEKPMSVYKIQKILNPEGKISSIVDTDKNGMNIKFPTFEKFKVFQENHEPWKKRILDPGSDIFLEWKRAFLCSCILSLFVDPLFFYLPSVAISTNKNSSCMVTDLNLGIVVTCFRTFADVFYLLNMVIKFRTAFVSPSSRVFGRGELVMDPRLIARRYLRSEFFLDLFAALPLPQIVIWFIMPAIRSSHDDHTNNALVLIVLLQYVPRLYMIFPLSSQIVKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRNENLPVKCILNYLDCSTINDGDRVKWANTTSVFGNCNPESSKVFNYGIFGNAVQNNVLSSMFIEKYLYCLWWGLQNLSSYGQSLTTSTFVWETAFAILIAILGLVLFAHLIGNMQTYLESITVRLEEWRLKRRDTEEWMKHRQLPQFLRERVRRFVQYKWLATRGVDEETILRGLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLKPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFELRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKKRALASSLSLREYKSFIDEQAIYQMEEHEEEEHRSLVNSNTAQVKQNLGVTILASRFAANTRKGVQKIKDAEMPKLQKPEEPDFSVEPEDD* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4013 726 Gene3D - 102 409 - -
Mtr3g4013 726 CDD CAP_ED 484 615 IPR000595 -
Mtr3g4013 726 Pfam Cyclic nucleotide-binding domain 507 595 IPR000595 -
Mtr3g4013 726 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 37 722 - -
Mtr3g4013 726 SMART cnmp_10 484 615 IPR000595 -
Mtr3g4013 726 MobiDBLite consensus disorder prediction 703 726 - -
Mtr3g4013 726 Gene3D Helix hairpin bin 412 475 - -
Mtr3g4013 726 SUPERFAMILY Voltage-gated potassium channels 77 406 - -
Mtr3g4013 726 MobiDBLite consensus disorder prediction 703 718 - -
Mtr3g4013 726 ProSiteProfiles cAMP/cGMP binding motif profile. 484 567 IPR000595 -
Mtr3g4013 726 SUPERFAMILY cAMP-binding domain-like 414 606 IPR018490 -
Mtr3g4013 726 Pfam Ion transport protein 84 411 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mtr3g4013 726 Gene3D Jelly Rolls 482 602 IPR014710 -
Mtr3g4013 726 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4013 Mtr-Chr3 53873389 53877807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4013 46 722 Ion Channels AT2G24610 71.303 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4013 K05391 - gmx:100803334 1239.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4013 3 53873389 53877807 Mtr3g4013 3 53873389 53877807 ECH