Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4009 ATGACATTGAGATTGATGGATTTTCCAAACATGGATGAGGAAAAAGAAAAAGCAATATTAGAAACTGCCACACAAAGCATAAACTCACTTACCAGCTTCGCTAATAACGTCTCTCCCCAACCCTCTCTTCAAAACACTCAACTCACCAACATCACTGTTTCAGAACTCAAGAAACTATCCAACTTACTAAACCGTAAAGGCCACGCTCGCTTCCGCCGCAATCCGAATGCAACTCCTGATCAACCGCTGCCAAAATCATCCACTCCCTCCACCTCTACTCAGCCACCACCACCACCACTTCAAATTCAAATTCCTCCCAAGAGCCATAACCAACCTTTAACTCTCGATTTTACTAAACCTTACACCTTTATATCTAACCCTAAATCCTTAGATCTAGAAATCCCCAAGGAAACATTTAGTTTTCCATCACTCCTGTCCTCCGCCATCACCGGCGACGGCAGTGTTTCCGATGGCAGGCTAGGTCCATGTCCATCTATCATCCCCACCCCCGCTGTCTCCCGAGGTAAACAGCCTCTTTCATCCATCACACCATTCATGTCCTCCCCCATTACCGGCCATTACACCGGCGAAGGCAGTGGTTCCAATGGCAGACTAGGTCTATCTCCATTCCTTACCCCCTCTGTCTCCCGTGGTAAACAGCCTCTTACATCTTACTCATCCTTCATGTCCTCCGCCATCACCGGTGATAGAAGCGTTTCCAGCGGCAGAATCGGTCCATCTTATACCCTCACCCCTGCTGTCTCCGGTGGTAAGCCGCCTCTTTCATCGCCGACATTGAAGAAAAGCTGTCACAGTCACTCCGGCGATGTCTCTGGGAAAACCTCCGCATCTAAGAAATGCCACTGCCAGAAAAGGAAAAATCGGAACAGGAGAGAAGTGAGAGTCCCGTGCATAAGTTCAAGGATTGCTGATATACCAGCAGATGAGTATTCATGGAGGAAGTATGGTTCCAAACCGATTAAGGGAACACCACATCCAAGGGGCTATTATAGGTGCACTGTGTCTAAAAATTGTCCAGCTAGGAAAAGGGTGGAGAAAGCAAAGGATGATCCAAATATCCTGGTTGTAACGTACGAGTTTGAGCATCGTCATAATCAAGCCCCAATGCAAGAGAATAATTCTGGTTCAGGGTGTGGGAGTGGGAGCATGGATTTGGGGGTGTTTGAGCTAACCTTAGGAGGAGGGAATTAG 1212 0.4761 MTLRLMDFPNMDEEKEKAILETATQSINSLTSFANNVSPQPSLQNTQLTNITVSELKKLSNLLNRKGHARFRRNPNATPDQPLPKSSTPSTSTQPPPPPLQIQIPPKSHNQPLTLDFTKPYTFISNPKSLDLEIPKETFSFPSLLSSAITGDGSVSDGRLGPCPSIIPTPAVSRGKQPLSSITPFMSSPITGHYTGEGSGSNGRLGLSPFLTPSVSRGKQPLTSYSSFMSSAITGDRSVSSGRIGPSYTLTPAVSGGKPPLSSPTLKKSCHSHSGDVSGKTSASKKCHCQKRKNRNRREVRVPCISSRIADIPADEYSWRKYGSKPIKGTPHPRGYYRCTVSKNCPARKRVEKAKDDPNILVVTYEFEHRHNQAPMQENNSGSGCGSGSMDLGVFELTLGGGN* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4009 403 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 221 377 IPR044810 GO:0003700
Mtr3g4009 403 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 183 IPR044810 GO:0003700
Mtr3g4009 403 ProSiteProfiles WRKY domain profile. 308 374 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr3g4009 403 MobiDBLite consensus disorder prediction 67 113 - -
Mtr3g4009 403 Gene3D WRKY domain 299 375 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr3g4009 403 SMART WRKY_cls 313 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr3g4009 403 MobiDBLite consensus disorder prediction 250 292 - -
Mtr3g4009 403 Pfam WRKY DNA -binding domain 315 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr3g4009 403 Pfam Plant zinc cluster domain 267 311 IPR018872 -
Mtr3g4009 403 PANTHER WRKY PROTEIN 221 377 - -
Mtr3g4009 403 PANTHER WRKY PROTEIN 15 183 - -
Mtr3g4009 403 SUPERFAMILY WRKY DNA-binding domain 311 373 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr3g4009 403 MobiDBLite consensus disorder prediction 265 284 - -
Mtr3g4009 403 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4009 Mtr-Chr3 53831854 53833652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4009 232 379 WRKY Transcription Factor Family AT2G24570 59.615 2.60e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr3g4009 WRKY 1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4009 - - mtr:MTR_3g108960 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4009 3 53831854 53833652 Mtr3g4009 3 53831854 53833652 ECH
Mtr4g4622 4 60208631 60210197 Mtr3g4009 3 53831854 53833652 ECH