Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4003 ATGGATGAATATTCTAGTAAGAGAGCCAATGATGGGGTGATAGTTCCTAGAAAGGGGATGAGCACCATGTTTAAAGATACTGCCACTACCCGAGATCGAAATGGTCAAGTATGTAGCCGCCTTGGTTGCAGCAGCAAAGTCAACTCTTCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAGGGTAAATCTTTGAGGCCTTCATTTCGGTTCTCATCAAATGGCAAGGAAACAATTGGTAGCTCCTCTAGAACGTTCTCCGGGAGTAGTAGCCCAGGAAAACCCCATAGAAAGCCTCAGAAAAAGTTATCATCTCAGATAGAGACAGATTCATCTGAAACTAATAGTGTACAAGATGAACCAGAAGTTTCAAAGCTCACACCTCCACAAAAAAACCAGAGGGGTCTTCAAGCCGAAGGGGAAAACACAGATTCTAGTAATGGGGTGCTGATGGAAGTAGGAAGTTCTAGTTTAGCCTCTAATACAAGATCTAGGAGGAATTTTCATCCAAAACCTGGATTACGTAGTCAAGAAATTCAAAGCACCGGTCCAGGGACACGTGCTGGTACCAGTAGGTATGGGTTAAGGAACCTCAAATGCAACTCCATTTCTGATGTCATGCCCGTCGGTTGTACACCATCTGATTCAACCCTAAACAAAAAGAAGGATGCGATAAAAAAGAGAAATTGTGAAGGAGAAAGTAGTTCTACAGCTAGAGGCAAAAAAATTAACGGGCCGTTAATTGATGGACGGAATTCTGTATCCAGAAATGGCCTATCTATCTCTGATTCAAGAATATCTAGAAATGCCCCTCATAGGGACAGGGCAGACAGCAACATAGCGTCTGGTAGAACACGAAGATCAATTGGCGGTCATGGTAGGGGAAGGGTTTCTGGCCAAGGAAATGCTAATCCTGTGGCCCCTAATCAGTCCCTTATCATGGTACCTTCCTTTTCTTATTCTGGAAATCTTAATTCTCCTGGTGTACAACATCATAATTCTCTGGAGACTCCTTCAAGTCCAAGTTCTTACAGTGGAGCAGGTACTAGTAGTGAGGAACTGTACGGTGTTATGCCAACGTCTCCTACAGAATACGGGCTCACCCATTCTCTAATAAATCGGGATAGCTTTCGACGACGCTACAACATGGATGGTATTGCAGAGGTACTGTTGGCACTTGAGAGGATTGAACAAGATGTCGAGCTAACACACGAGCAAATTCACTTGTTGGAGTCCAACTTGTTCCTTACTGGACTAAACTTCTTTGATCAGCATAGAGATATGCGACTGGACATCGATAATATGTCATATGAGGAATTACTGGCTCTGGAAGAAAGGATGGGTACTGTGAGCACCGCTGTAACAGAGGAAGATCTATCAGAATGCCTAAAGAGAAGTTTCTATCAATCCTCACCCTCAGACAATGCAACCAAGTGTTGCAATGAGAATAAGGATGATATCAAATGCTGCATCTGCCAGGAGGAGTATGTGGAGGAAGATGAAGTGGGGAGTCTACTATGCGAGCACAAATATCATGTTGTTTGCATACAGCAGTGGCTACGACTAAAGAACTGGTGTCCTATTTGCAAAGCATCAGTGACACCGTCAAGTTCGCCGTCGTCCCACTAG 1626 0.4379 MDEYSSKRANDGVIVPRKGMSTMFKDTATTRDRNGQVCSRLGCSSKVNSSKGAQIGSSEKGKSLRPSFRFSSNGKETIGSSSRTFSGSSSPGKPHRKPQKKLSSQIETDSSETNSVQDEPEVSKLTPPQKNQRGLQAEGENTDSSNGVLMEVGSSSLASNTRSRRNFHPKPGLRSQEIQSTGPGTRAGTSRYGLRNLKCNSISDVMPVGCTPSDSTLNKKKDAIKKRNCEGESSSTARGKKINGPLIDGRNSVSRNGLSISDSRISRNAPHRDRADSNIASGRTRRSIGGHGRGRVSGQGNANPVAPNQSLIMVPSFSYSGNLNSPGVQHHNSLETPSSPSSYSGAGTSSEELYGVMPTSPTEYGLTHSLINRDSFRRRYNMDGIAEVLLALERIEQDVELTHEQIHLLESNLFLTGLNFFDQHRDMRLDIDNMSYEELLALEERMGTVSTAVTEEDLSECLKRSFYQSSPSDNATKCCNENKDDIKCCICQEEYVEEDEVGSLLCEHKYHVVCIQQWLRLKNWCPICKASVTPSSSPSSH* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4003 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 449 535 IPR013083 -
Mtr3g4003 541 MobiDBLite consensus disorder prediction 249 265 - -
Mtr3g4003 541 MobiDBLite consensus disorder prediction 323 350 - -
Mtr3g4003 541 MobiDBLite consensus disorder prediction 173 187 - -
Mtr3g4003 541 MobiDBLite consensus disorder prediction 266 280 - -
Mtr3g4003 541 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 533 - -
Mtr3g4003 541 MobiDBLite consensus disorder prediction 23 93 - -
Mtr3g4003 541 ProSiteProfiles Zinc finger RING-type profile. 488 529 IPR001841 -
Mtr3g4003 541 SUPERFAMILY RING/U-box 482 535 - -
Mtr3g4003 541 MobiDBLite consensus disorder prediction 226 308 - -
Mtr3g4003 541 MobiDBLite consensus disorder prediction 1 191 - -
Mtr3g4003 541 Pfam Ring finger domain 487 529 IPR001841 -
Mtr3g4003 541 SMART ring_2 488 528 IPR001841 -
Mtr3g4003 541 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 533 IPR045191 GO:0061630
Mtr3g4003 541 MobiDBLite consensus disorder prediction 104 166 - -
Mtr3g4003 541 Coils Coil 392 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4003 Mtr-Chr3 53765498 53769848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4003 385 529 C3H Transcription Factor Family AT2G15530 44.138 2.94e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4003 - - gmx:100787213 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4003 3 53765498 53769848 Mtr3g4003 3 53765498 53769848 ECH
Mtr1g0131 1 1462698 1467467 Mtr3g4003 3 53765498 53769848 PCT