Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4001 ATGGGAGGTATCAGCCTAGAGGAGATCAAAAACGAGAACGTTGATCTGGAACGAATTCCAGTAGAGGAAGTGTTCGAGCAACTGAAATGTTCAAGAGCAGGTTTAACCTCAGACGAAGGAGCCAACAGGCTTCAAGTGTTTGGTCCAAACAAATTGGAAGAGAAAAGGGAAAGCAAGTTTTTGAAGTTCTTAGGATTTATGTGGAATCCATTATCATGGGTTATGGAAGCTGCTGCTATTATGGCCATTGCTTTGGCTAATGGCAGTGGAAGACCTCCTGATTGGCAGGATTTTGTTGGTATCATTTCTCTTTTGGTTATTAACTCAACTATCAGTTTCATTGAAGAGAATAATGCTGGTAATGCTGCTGCTGCTCTCATGGCTGGTTTAGCCCCCAAAACAAGGGTTCTCAGAGATGGTAGGTGGTCTGAAGAAGATGCTGCAATTTTGGTCCCAGGTGATATCATCAGCATTAAATTAGGAGATATCATTCCTGCTGATGCTCGTCTGCTTGAGGGTGATGCTTTGAGTGTTGATCAGTCTGCTTTAACTGGAGAATCTCTCCCGGCAACAAAGAATCCCTCAGATGAAGTGTTTTCTGGTTCAACTGTTAAGAAAGGTGAGATTGAAGCAGTTGTAATTGCTACTGGAGTGCACACATTTTTTGGTAAAGCTGCTCATTTGGTTGACAGCACCAATCAAGTTGGTCACTTTCAGAAAGTCCTAACAGCAATTGGTAATTTCTGCATTTGCTCAATTGCTGTTGGAATACTGATTGAACTCGTTGTCATGTATCCGATACAACACCGCAAGTATAGAGACGGAATTGACAATCTTTTGGTTCTATTGATTGGAGGAATTCCAATTGCTATGCCAACTGTTTTGTCTGTTACTATGGCTATTGGTTCTCACAGACTCTCTCAACAAGGTGCAATTACAAAGAGAATGACAGCTATTGAGGAAATGGCAGGGATGGATGTTCTCTGTAGTGACAAAACCGGAACTCTGACTTTAAATAAGTTATCTGTTGACAAAAACTTGATTGAGGTTTTTGCTAAGGGTGTAGAGAAGGATTATGTCATCCTTCTTGCTGCAAGGGCTTCTAGGACTGAGAATCAAGATGCCATAGATGCTGCAATTGTTGGCATGCTTGCTGATCCAAAGGAGGCACGAGCTGGTGTCAGGGAGGTTCATTTTTTCCCATTCAATCCTGTAGACAAGAGAACTGCTTTAACTTACATTGATGCTGATGGAAATTGGCATAGATCAAGCAAAGGTGCTCCTGAGCAGATATTGAACCTCTGCAACTGCAAAGAGGATGTCAGGAAAAAAGCTCATTCGACAATTGACAAGTTCGCCGAGCGTGGACTCCGTTCTCTGGGTGTTGCTAGACAGGAAATACCTGAGAAAGATAAAGATAGCCCTGGTGCACCATGGCAATTTGTTGGTCTGTTACCTCTATTTGATCCTCCTAGGCATGATAGTGCTGAAACCATCACAAGAGCTCTGAACCTTGGTGTGAATGTTAAGATGATTACTGGTGATCAGCTTGCCATTGCCAAGGAAACTGGCCGAAGGCTTGGAATGGGAACGAACATGTATCCATCTTCTTCATTGCTCGGTCAAAGCAAGGATGCTGCTGTTTCAGCTCTTCCAGTTGATGAGTTGATTGAGAAGGCTGATGGATTTGCTGGAGTGTTTCCTGAACACAAATATGAAATCGTAAAGAAGCTGCAAGAGAGGAAACATATATGTGGAATGACAGGTGATGGTGTCAACGACGCTCCTGCCTTAAAGAGAGCAGATATTGGAATTGCTGTTGCTGATGCTACAGATGCTGCTAGAGGTGCTTCTGATATTGTCCTTACTGAGCCCGGTCTGAGTGTCATTATTAGTGCAGTGCTCACAAGCAGGGCAATTTTCCAAAGGATGAAGAACTATACTATCTATGCTGTGTCAATTACCATCCGTATTGTGTTTGGTTTCATGTTCATTGCCTTGATCTGGAAGTTTGATTTTGCACCCTTCATGGTGTTAATTATCGCCATACTAAATGATGGTACCATTATGACAATATCCAAGGATAGAGTAAAACCATCTCCAATGCCAGACAGTTGGAAACTGAGAGAGATATTTGCTACTGGTGTTGTGCTAGGTAGCTACATGGCACTAATGACAGTGGTGTTTTTCTGGCTCATGAAGGATACCGATTTCTTCTCGGACAAGTTTGGTGTGAGATCAATCAGAAACAACCCTGATGAAATGATGGCAGCCCTCTACCTACAAGTCAGTATTATAAGTCAGGCACTAATTTTTGTCACCAGGTCCCGTAGCTGGTCCGTTGTTGAAAGACCTGGTCTTCTCCTATTGGGTGCTTTTATGATTGCTCAGCTGTTGGCAACTTTTATAGCAGTATATGCTAATTGGAGCTTTGCAAGAATTAAGGGAATGGGATGGGGTTGGGCTGGTGTAATCTGGATGTACAGTATAGTGACATATATCCCCCTTGATATACTCAAATTCGTAATCCGCTATGTTCTAAGTGGCAAAGCTTGGGATAATCTTCTGGAGAACAAGACTGCCTTCACAACAAAGAAAGACTATGGCAAAGAAGAGAGAGAAGCTCAGTGGGCAACTGCTCAGAGGACTCTTCATGGTCTTCAGTCACCTGACACAACCAACCTTTTCAATGACAAGAATAGCTACAGGGAGCTTTCTGAGATTGCTGAGCAAGCCAAGAGACGCGCTGAAGTTGCACGGCTTAGGGAGCTTCACACACTAAAGGGTCACGTTGAATCAGTCGTGAAGCTTAAGGGACTTGATATCGACACTATGCAACAACATTATACTGTTTAA 2856 0.4289 MGGISLEEIKNENVDLERIPVEEVFEQLKCSRAGLTSDEGANRLQVFGPNKLEEKRESKFLKFLGFMWNPLSWVMEAAAIMAIALANGSGRPPDWQDFVGIISLLVINSTISFIEENNAGNAAAALMAGLAPKTRVLRDGRWSEEDAAILVPGDIISIKLGDIIPADARLLEGDALSVDQSALTGESLPATKNPSDEVFSGSTVKKGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGILIELVVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVEKDYVILLAARASRTENQDAIDAAIVGMLADPKEARAGVREVHFFPFNPVDKRTALTYIDADGNWHRSSKGAPEQILNLCNCKEDVRKKAHSTIDKFAERGLRSLGVARQEIPEKDKDSPGAPWQFVGLLPLFDPPRHDSAETITRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQSKDAAVSALPVDELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLREIFATGVVLGSYMALMTVVFFWLMKDTDFFSDKFGVRSIRNNPDEMMAALYLQVSIISQALIFVTRSRSWSVVERPGLLLLGAFMIAQLLATFIAVYANWSFARIKGMGWGWAGVIWMYSIVTYIPLDILKFVIRYVLSGKAWDNLLENKTAFTTKKDYGKEEREAQWATAQRTLHGLQSPDTTNLFNDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTMQQHYTV* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4001 951 SFLD C1.7: P-type atpase like 311 639 - -
Mtr3g4001 951 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Mtr3g4001 951 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 101 347 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr3g4001 951 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 563 678 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr3g4001 951 Coils Coil 902 922 - -
Mtr3g4001 951 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 847 IPR023298 -
Mtr3g4001 951 CDD P-type_ATPase_H 34 841 IPR006534 GO:0008553|GO:0016021|GO:0120029
Mtr3g4001 951 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 34 806 IPR006534 GO:0008553|GO:0016021|GO:0120029
Mtr3g4001 951 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Mtr3g4001 951 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Mtr3g4001 951 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Mtr3g4001 951 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Mtr3g4001 951 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Mtr3g4001 951 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Mtr3g4001 951 Pfam E1-E2 ATPase 131 308 - -
Mtr3g4001 951 Gene3D - 341 488 IPR023299 GO:0000166
Mtr3g4001 951 SFLD p-type atpase 311 639 IPR044492 -
Mtr3g4001 951 Gene3D - 94 815 - -
Mtr3g4001 951 Gene3D - 900 951 - -
Mtr3g4001 951 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
Mtr3g4001 951 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Mtr3g4001 951 PANTHER CALCIUM-TRANSPORTING ATPASE 1 931 - -
Mtr3g4001 951 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Mtr3g4001 951 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Mtr3g4001 951 SUPERFAMILY HAD-like 325 635 IPR036412 -
Mtr3g4001 951 PANTHER PLASMA MEMBRANE ATPASE 1 931 - -
Mtr3g4001 951 Gene3D - 326 625 IPR023214 -
Mtr3g4001 951 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr3g4001 951 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr3g4001 951 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr3g4001 951 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr3g4001 951 PRINTS H+-transporting ATPase (proton pump) signature 760 781 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr3g4001 951 Gene3D - 132 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4001 Mtr-Chr3 53749259 53755718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4001 4 951 Primary Pumps ATPases AT2G07560 83.544 0.0 1627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4001 K01535 - gmx:547525 1773.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4001 3 53749259 53755718 Mtr3g4001 3 53749259 53755718 ECH
Mtr1g0136 1 1526305 1534791 Mtr3g4001 3 53749259 53755718 PCT