Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3988 ATGATGGAGTTTGCTAGAAGTGAAAAGTTTAGTAACTGTGTTGTTTTTATCTTGTTCTTTAACGCGTTGTTGTTGTGTTGTGTGAGTGGAATTGGTGTTAACTGGGGTACACAGTGTACACATCTTTTGTCACCAACCACAGTGGTGAAAATGCTGAAAGATAATGGGATTCAGAAGGTGAAACTATTTGATGCTGATCCAAATATCTTAAATGCTCTCAAGAAGACTGGTATTCAAGTCATGGTGGGGATTCCAAATGACATGCTTTATACACTTGCTAATAGTCTTCCAGCTGCTGAAAAATGGGTTTCCAAGAATGTTTCTGCTCATGTCTCTTCTGGAGGTGTTGATATCAGGTATGTTGCTGTGGGTAACGAACCATTCCTGTCAACATACAATGGCACCTTTGAAGCAACAACACTGCCAGCTCTTGTAAACATCCAGGCAGCTCTCACAAAAGCCGGTCTGAGCAGTCGGGTCAAAGTCACCGTCCCTTTAAACGCTGATGTATATGAAAGCTCGTCAGAAAAGCCATCCGACGGCGATTTCAGATCGAATATCAACAATCTCATGCTGCAGATAGTCAAATTCTTGAGCGACAACGGAGCTCCATTCACTGTTAACATCTATCCTTTTATCAGCCTCTACTTGGATCCCAGTTTCCCCTCTGAATATGCCTTTTTTAATGGCTTCCAGTCTGCTATAGTTGACAATGGAAAGACCTACGACAACGTGCTCGATGCTAACCATGATACTCTGGTTTGGGCACTACAAAAACACGGTTATGGAAACTTGCCTATAATTGTCGGGGAAATAGGGTGGCCTACGGACGGAGACAAATTTGCAAATCTTCAAAATGCGCAGCGATTTAACCAAGGTTTTATGTCAAAGTATGTTTCTGGAAAGGGTACACCGATGAGGCCTAGTCCTATAGACGCATACTTGTTTAGTTTCATAGATGAAGATAATAAGAGCATTCAGCCCGGGAACTTCGAGCGTCATTGGGGGCTGTTTTACTTAGATGGACAGCCCAAATACCAACTTAATCTTGGAACGGGCCGGGCCAACGGATTGGTAGGAGCTAGCGGTGTTGATCATTTGGCGAAAAAGTGGTGCGTTTTGAAGCCTTCAGCAAATCTTAATAGTGATCAATTGGCACCAAGTGTATCTTATGCTTGTCAAAACGCTGATTGTACTAGTCTTGGATATGGAACTTCATGTAGTAATTTAGATGTGAAAGGCAATATCTCTTATGCATTTAACAGTTACTACCAAGTTAATGATCAGATGGATAGTGCATGCAAATTCCCTGGACTTTCGATGGTTACCGATAAAGATCCTTCAGTTGGAACTTGCAAATTCAGAATCATGATACAGACAGATTCTGCTGAGCTAAATGGTATTGTTGGGTCAACAACAACAGTGTTCCTTGCTTTGGTTTTTTCACTCTTGTGTAATGTTAAATTTTGA 1470 0.4156 MMEFARSEKFSNCVVFILFFNALLLCCVSGIGVNWGTQCTHLLSPTTVVKMLKDNGIQKVKLFDADPNILNALKKTGIQVMVGIPNDMLYTLANSLPAAEKWVSKNVSAHVSSGGVDIRYVAVGNEPFLSTYNGTFEATTLPALVNIQAALTKAGLSSRVKVTVPLNADVYESSSEKPSDGDFRSNINNLMLQIVKFLSDNGAPFTVNIYPFISLYLDPSFPSEYAFFNGFQSAIVDNGKTYDNVLDANHDTLVWALQKHGYGNLPIIVGEIGWPTDGDKFANLQNAQRFNQGFMSKYVSGKGTPMRPSPIDAYLFSFIDEDNKSIQPGNFERHWGLFYLDGQPKYQLNLGTGRANGLVGASGVDHLAKKWCVLKPSANLNSDQLAPSVSYACQNADCTSLGYGTSCSNLDVKGNISYAFNSYYQVNDQMDSACKFPGLSMVTDKDPSVGTCKFRIMIQTDSAELNGIVGSTTTVFLALVFSLLCNVKF* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3988 489 SUPERFAMILY (Trans)glycosidases 31 349 IPR017853 -
Mtr3g3988 489 ProSitePatterns Glycosyl hydrolases family 17 signature. 265 278 IPR000490 GO:0004553|GO:0005975
Mtr3g3988 489 Pfam X8 domain 370 440 IPR012946 -
Mtr3g3988 489 Pfam Glycosyl hydrolases family 17 31 349 IPR000490 GO:0004553|GO:0005975
Mtr3g3988 489 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 19 462 IPR044965 GO:0004553|GO:0005975
Mtr3g3988 489 Gene3D Glycosidases 30 356 - -
Mtr3g3988 489 Gene3D - 366 464 - -
Mtr3g3988 489 SMART X8_cls 370 454 IPR012946 -
Mtr3g3988 489 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 19 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3988 Mtr-Chr3 53624205 53627226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3988 15 483 Glycoside Hydrolase AT4G31140 68.000 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3988 K19893 - gmx:100796552 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3988 3 53624205 53627226 Mtr1g0877 1 10138718 10147640 PCT