Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3979 ATGGCAGTAAAACCTACCAAAGCCGAGAAGAAGCAGAACTACGATGCTAAGCTTTGCCAGCTTATCGATGAATACACCCAAATCCTTGTTGTCAACGCCGACAACGTTGGATCTAAACAGCTACAGAACATTCGTCAGGGTCTACGTGGTGACTCCGTTGTTCTCATGGGAAAGAACACCATGATGAAGCGATCTGTTCGTATGCACGCTGAGAAAACTGGCAACAATGCTTTTCTCAACCTTATCCCTCTTCTTGTCGGAAATGTTGGTTTGATTTTCACAAAAGGTGACTTGAAGGAAGTCAGTGAAGAAGTTGCTAAATACAAGGTTGGAGCTCCTGCCCGTGTTGGTTTGGTTGCTCCAATTGATGTCGTTGTTCCTCCAGGCAACACAGGGCTCGACCCATCTCAGACCTCTTTCTTCCAGGTGCTCAACATCCCAACCAAGATTAACAAGGGTACTGTGGAAATCATTACCCCAGTGGAACTGATTAAGAAAGGAGACAAGGTTGGATCTTCTGAAGCTGCATTGCTTGCCAAGTTAGGTATTAGGCCCTTTTCATATGGGCTTGTGGTCCTTTCTGTTTATGACAATGGTTCAGTGTTTAGCCCTGAGGTTCTTGACCTCACTGAGGATGACCTTGTTGCGAAGTTCGCTATTGGGGTTTCCATGGTCACTTCACTTTCATTGGCCATCTCTTACCCAACACTTGCCGCTGCTCCTCATATGTTTGTCAATGCCTACAAGAACGTTCTTGCTTTTGCCGTTGCTACCGAATATTCTTTCCCTGAGGCAGACAAGGTTAAGGAGTACCTGAAGGACCCAAGTAAATTTGCTGTAGCTGTTGCTGCCCCAGCTGCTGCTGCATCTGGTGGTGCCCCTGCTGCCGCTGCCAAGGAGGAGGCTAAGAAGGAAGAGCCTGAAGAAGAGTCTGATGAAGACATTGGTTTCGGTCTATTTGGTGATGATTAG 972 0.4691 MAVKPTKAEKKQNYDAKLCQLIDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLVAKFAIGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAFAVATEYSFPEADKVKEYLKDPSKFAVAVAAPAAAASGGAPAAAAKEEAKKEEPEEESDEDIGFGLFGDD* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3979 323 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Mtr3g3979 323 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Mtr3g3979 323 Gene3D - 6 209 IPR043141 -
Mtr3g3979 323 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 321 - -
Mtr3g3979 323 MobiDBLite consensus disorder prediction 293 323 - -
Mtr3g3979 323 CDD Ribosomal_P0_L10e 9 185 - -
Mtr3g3979 323 Pfam 60s Acidic ribosomal protein 234 320 - -
Mtr3g3979 323 Pfam Ribosomal protein L10 7 108 IPR001790 -
Mtr3g3979 323 MobiDBLite consensus disorder prediction 306 323 - -
Mtr3g3979 323 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 1 321 - -
Mtr3g3979 323 Gene3D - 114 185 IPR043164 -
Mtr3g3979 323 PIRSF L10E 1 321 IPR030670 GO:0042254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3979 Mtr-Chr3 53476272 53478799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3979 1 321 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 84.112 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3979 K02941 - jre:108991896 514.998