Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3977 ATGGGAGAAGTGGCAGTAATGCACTCCGAGCCTCTTCAATTTGAGTGCAATGACAGGAAGCTTATCACGGAGAAAGATGTGCATAATCTACCCTCAAATGAAGAGCGCATGCATGGCGAAAAGTCTAGCCAATCACCAGACCACAAAAAGATCAATGACTTGCGAGAGAGAGGATATATGGAGTATGGATGTCAACATTACCGGAGAAGGTGTCATATCAGGGCCCCTTGTTGCAATGAGATATTTGATTGTCGCCATTGTCACAATGAGGCAAAAAACAGCATCGACATCGATCAGAAGCATAGACACGACATTCCCCGCCATCAAGTCAAACAAGTGATATGTTCACTATGTGAGACTGAACAGGAGGTTCAGCAGAACTGTATCAATTGCGGCGTGTGCATGGGCAAGTATTTTTGCGGGACATGTAAGCTCTTTGATGATGATGTATCTAAGCAGCAGTACCATTGCAGTGGTTGTGGAATTTGCAGAACTGGAGGGTCTGAAAATTTCTTCCACTGCTACAAGTGTGGTTGTTGCTACTCAACTTTGTTGAAAAACGGTCACCCTTGCGTGGAAGGAGCAATGCATCAAGATTGTCCTGTTTGTTTTGAGTATTTGTTTGAATCTGTCAACGACGTCTCCGTGTTGCATTGCGGCCATACAATCCATAAGAGCTGTCTGAATGAAATGAGGGAACATTTTCAGTATGCATGCCCTTTGTGCTCAAAGTCAGTTTGTGATATGTCAAAGGTTTGGGAAAAAATTGACTTGGAACTGGCTGCTACACCGATGCCTGAACCATATCTTAATAAAACGGTTTGGATCCTTTGCAATGATTGTGGCGAAAATTCTCACGTCCAGTTTCATCTTGTTGCACAAAAGTGCTTGAACTGCAAATCTTATAACACAAGACAAACCAGAGGCTGA 930 0.4333 MGEVAVMHSEPLQFECNDRKLITEKDVHNLPSNEERMHGEKSSQSPDHKKINDLRERGYMEYGCQHYRRRCHIRAPCCNEIFDCRHCHNEAKNSIDIDQKHRHDIPRHQVKQVICSLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGSENFFHCYKCGCCYSTLLKNGHPCVEGAMHQDCPVCFEYLFESVNDVSVLHCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKIDLELAATPMPEPYLNKTVWILCNDCGENSHVQFHLVAQKCLNCKSYNTRQTRG* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3977 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 261 IPR013083 -
Mtr3g3977 309 MobiDBLite consensus disorder prediction 30 52 - -
Mtr3g3977 309 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Mtr3g3977 309 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Mtr3g3977 309 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 26 309 - -
Mtr3g3977 309 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Mtr3g3977 309 Gene3D - 271 309 - -
Mtr3g3977 309 Pfam Zinc-ribbon 247 305 IPR039512 -
Mtr3g3977 309 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Mtr3g3977 309 SUPERFAMILY RING/U-box 198 246 - -
Mtr3g3977 309 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 26 309 - -
Mtr3g3977 309 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Mtr3g3977 309 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Mtr3g3977 309 SMART ring_2 200 242 IPR001841 -
Mtr3g3977 309 Pfam Ring finger domain 199 242 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3977 Mtr-Chr3 53466569 53471787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3977 62 309 C2H2 Transcription Factor Family AT3G18290 39.370 1.37e-51 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3977 K10144 - gmx:100812023 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0167 1 1827640 1836086 Mtr3g3977 3 53466569 53471787 PCT
Mtr3g3977 3 53466569 53471787 Mtr1g0114 1 1250792 1254014 PCT