Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3974 ATGCAGTTCAAATCATCACAATCATCATTTCGAGATCGTACACATGAATTCCTCACCGTTGCAGAGAGATTGAAGAAATCAGTTTCATCTGGATCAGCTCCAAACGGAGCCACCACCAGTGCTCCTTCTTCCTCTTTCCCTTCTTCTTCCAGATCCGACGATCCTCGATCTGCCGTTGCAATTCAATCCGAGTTTAATCGAAGAGCTTCCAAAATCGGTTATGGAATTCACCAAACTTCTCAGAAACTTTCCAAGCTCGCCAAATTGGCGAAAAGGACTTCGGTTTTTGACGATCCAACAATGGAGATTCAAGAATTAACAAGTGTTATTAAGCAAGATATTACTGCGCTTAACTCTGCGGTTGTGGATCTTCAATTAATCAGTAATTCTAGAAATGAGAGTGGAAATGTTTCTACCGACACTACTAGTCATTCAACTACTGTCGTGGATGACCTAAAGACGCGATTGATGAGCACTACCAAGGAATTTAAAGATGTTCTTACCATGCGAACTGAGAATTTGAAAGTGCATGAGAATAGAAGACAATTGTTTTCGGCGAATGCTTCTAAGGATTCTGCCAATCCTTTCATCCGTCAACGTCCTTTAGCTACAAAGTCGGCTGCTAGTACTTCTAGTGCCCCTGCACCTCCATGGGCTAGTGGGAAGCAGGTGGATGGAGAGAGTCAACCGTTGTTGCAGCAGCAGCAGCAGCAGGTAGTTCCATTGCAGGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAAAATGTTGAGTCCACTATTCATGAGCTCAGCAACATCTTTAATCAACTAGCAACACTTGTCTCCCAGCAAGGGGAGGTTGCCATAAGGATTGATGAGAACATGGATGATACGTTGGCAAATGTGGAGGGGGCACAAGGGGCTTTGTTGAAGTATTTAAATAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTGATGTTTTTCCTCATGGTTTTCTTATTTTTTGTGGCATAG 1011 0.4273 MQFKSSQSSFRDRTHEFLTVAERLKKSVSSGSAPNGATTSAPSSSFPSSSRSDDPRSAVAIQSEFNRRASKIGYGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLISNSRNESGNVSTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSANASKDSANPFIRQRPLATKSAASTSSAPAPPWASGKQVDGESQPLLQQQQQQVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLMFFLMVFLFFVA* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3974 336 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Mtr3g3974 336 SMART tSNARE_6 239 306 IPR000727 -
Mtr3g3974 336 PANTHER SYNTAXIN-32-LIKE 2 335 - -
Mtr3g3974 336 MobiDBLite consensus disorder prediction 25 57 - -
Mtr3g3974 336 Pfam SNARE domain 281 332 IPR000727 -
Mtr3g3974 336 MobiDBLite consensus disorder prediction 203 217 - -
Mtr3g3974 336 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mtr3g3974 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
Mtr3g3974 336 CDD SNARE_syntaxin5 247 320 - -
Mtr3g3974 336 MobiDBLite consensus disorder prediction 202 232 - -
Mtr3g3974 336 Gene3D - 60 299 - -
Mtr3g3974 336 SUPERFAMILY t-snare proteins 63 299 IPR010989 GO:0016020|GO:0016192
Mtr3g3974 336 PANTHER SYNTAXIN 2 335 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3974 Mtr-Chr3 53434460 53438276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3974 1 336 SNARE and Associated Proteins AT3G24350 62.264 1.80e-145 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3974 K08490 - gmx:100777961 473.781