Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3966 ATGGCAAAATCTATACCAAAAATTGGTTCACGTAAAAATGGACGTATTGGTTCACGTAAACATCCTCGTAAAATACCAATGGGAGTTATTTATGTTCAAGCTAGTTTCAACAATACCATTGTGACTGTTACAGATGTACGAGGTCGGGTGATTTCTTGGTCCTCTGCCGGTTCGTGTGGATTCAAGGGTACACGAAGGGGGACACCATTTGCCGCTCAAACCGCAGCAGCAAATGCTATTCGAACAGTAGTAGATCAAGGCATGCAACGAGCCGTAGTCATAATAAAAGGTCCCGATCTAGGAAGAGATGCGGCATTAAGAGCTATTGCTAGAAGTGGTATACTATTAAGATTTATACAGGATGTAACCCCTATCCCACATAATGGATGTAGGGCTCCTAAAAAAAGACGTGTGTAA 417 0.4221 MAKSIPKIGSRKNGRIGSRKHPRKIPMGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPDLGRDAALRAIARSGILLRFIQDVTPIPHNGCRAPKKRRV* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3966 138 TIGRFAM uS11_bact: ribosomal protein uS11 20 135 IPR019981 GO:0003735|GO:0005840|GO:0006412
Mtr3g3966 138 Pfam Ribosomal protein S11 28 137 IPR001971 GO:0003735|GO:0005840|GO:0006412
Mtr3g3966 138 SUPERFAMILY Translational machinery components 24 138 - -
Mtr3g3966 138 MobiDBLite consensus disorder prediction 1 21 - -
Mtr3g3966 138 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 1 137 IPR001971 GO:0003735|GO:0005840|GO:0006412
Mtr3g3966 138 PANTHER 30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC 1 137 - -
Mtr3g3966 138 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 6 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Mtr3g3966 138 Gene3D Ribosomal protein S11 10 138 IPR036967 GO:0003735|GO:0005840|GO:0006412
Mtr3g3966 138 Hamap 30S ribosomal protein S11 [rpsK]. 11 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Mtr3g3966 138 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3966 Mtr-Chr3 53374789 53375339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3966 27 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 36.937 3.17e-13 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3966 K02948 - csin:14412458 237.654