Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3963 ATGGCAAACAATACACACCATGTCATCATTGATATAGCAACAACTTCTGAAACAACCACCCTTCCTCGTCATCAATTACATGATGTTGATGATGATGGTAGATTGCATGTTTCACTTCAAACTTCAAATCATTCATCGTCGCCACGACGAGGAGGAGGAGGAGGAGGGCGGAATAGTAGAAGCCCATTGAATTCAGGGTTTTGGATTTCTTTTGAATTTATTTTCACATTATCTCAAATTATTGCTTCTGTTATTGTTCTTATTTCATCAAGAGATGAGCATCCACGTGCTCCATTATTCGCTTGGATAGTTGGTTATGCTTCCGGTTGTGTTGTTTCCATTCCTTTGCTCCTTTGGCGATATTTTGTTAGAGACCAAAATTCATCTCAAACCAATTCCAGGACTGATGATCCTTCTGGGACACTTCTTTCTAATTCAACCGCAATTCATGGCGAAGATGATGTTCCTGTTGTTGCTGTCGCTTCCTCCAGAAATAGCCGAGCTTCGTCACGGTCGATGAGTGGAAGACCAAAGCTACTCATGGAATACTTCAAAACCACCTTAGATTTATTTTTTGCAATATGGTTTGTTATTGGAAATGTGTGGATTTTTGGAGGACATGCATCCGCCAACGATGCTCCTAATTTGTATCGGTTATGTATAGTGTTTCTTACTTTCAGTTGTATCGGTTACGCAATGCCCTTCATTCTATGCTTAACAATATGTTGTTGCCTTCCTTGTATAATATCAACCCTTGGGGTCACAGAGGATTTGACACAAACCCGAGGCGCAACCTCTGAATCTATTAATGCTTTACCAACTCACATATTCAAAACGATGAAAAGTAAAAGCAATGATGAATCTGATAACATTCCAGTTGTTATTGAAGGTGGAATCGTGGCTGAAGGAACTGAAAAGGAACGCATGATCTCTGGAGAAGATGCTGTTTGCTGCATATGCATAGCAAACTATGAAAACGATGATGAGTTAAGAGAATTACCATGTTCACATCTTTTTCACAAAGAGTGCGTAGACAAGTGGTTGAAGATAAATGCATTATGCCCCCTTTGCAAGAGTGAAATTGGCGAGAATGTAACAGAACCAGTTATTGAGGAAAATGCCAACCAACAAAGGGGTGAAAGCAGGGATGAGAATGGTATTGCCAGTACCTCGTCATAA 1179 0.4012 MANNTHHVIIDIATTSETTTLPRHQLHDVDDDGRLHVSLQTSNHSSSPRRGGGGGGRNSRSPLNSGFWISFEFIFTLSQIIASVIVLISSRDEHPRAPLFAWIVGYASGCVVSIPLLLWRYFVRDQNSSQTNSRTDDPSGTLLSNSTAIHGEDDVPVVAVASSRNSRASSRSMSGRPKLLMEYFKTTLDLFFAIWFVIGNVWIFGGHASANDAPNLYRLCIVFLTFSCIGYAMPFILCLTICCCLPCIISTLGVTEDLTQTRGATSESINALPTHIFKTMKSKSNDESDNIPVVIEGGIVAEGTEKERMISGEDAVCCICIANYENDDELRELPCSHLFHKECVDKWLKINALCPLCKSEIGENVTEPVIEENANQQRGESRDENGIASTSS* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3963 392 MobiDBLite consensus disorder prediction 369 392 - -
Mtr3g3963 392 SMART ring_2 317 357 IPR001841 -
Mtr3g3963 392 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 39 378 - -
Mtr3g3963 392 MobiDBLite consensus disorder prediction 38 59 - -
Mtr3g3963 392 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 39 378 - -
Mtr3g3963 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 366 IPR013083 -
Mtr3g3963 392 SUPERFAMILY RING/U-box 309 364 - -
Mtr3g3963 392 MobiDBLite consensus disorder prediction 368 392 - -
Mtr3g3963 392 CDD RING-H2_RNF111_like 316 358 - -
Mtr3g3963 392 Pfam Ring finger domain 317 358 IPR001841 -
Mtr3g3963 392 ProSiteProfiles Zinc finger RING-type profile. 317 358 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3963 Mtr-Chr3 53357636 53360346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3963 46 364 C3H Transcription Factor Family AT1G80400 53.231 1.47e-128 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3963 - - gmx:100775815 466.848