Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3961 ATGAGTAAAGCAAATAGTACATTGTGTGCCAAAGATGAAGAGCGTCCACTCAGAATTACCAGATCAAGGGCAAAAGTTTTGGGAGGACCCTCTTTGGAAAATGAAGGGAAAAGAGCAACAACTTCCAAAATGGTTGTTTCTTCTGAGAATAAAACATGTGTTGTTGTTCCTCACCGTAAACGAAGGGCAGGGCTTACTGATGTAACTAACATCACTGCAAAACCACATGATAAACGTGTTAAACAATCCAATTTTCAGGCCAAAGGAGTTTACCAGAAGAAAAACACAAAACTAACTTCAGATGTCTCCATTGAAGTTTCATCAGCACAAGAGGATGGTAAAGAGAAGGTAGCTGAAGAATTGACTACCATAAAGATGGTAGAGTCAAATGACACCATTGCTGCAGTAACTTTGGTTGATGAACCAACTGAACATTGTATGTCCAACAACATAAGTGAACATGTTATGACAGAAACCGCGCTTTCGATGCAAGAATGTGTGAACTCTGGTGAACTCGCTACCTCTCCAAGCCAAAGCAAAGACATAAATATGATTTGTGAGAAGATAGGAGCCTCGGATTGCCTGACCTTTGTGGACATCGATAAAAAGTTAATGGATTCTCAAATTTGGAGTGCTTATGCCCCTGATATATACACTAAAGTTCGAGTCTCTGAGCTTGAAAAAAGACCATCAACCAACTACATGGAGAAGTTGCAGCAAGATATTTCTCCAAGCATGCGTGGAATTCTGATTGATTGGCTTGTGGAGGTTTCCGAGGAATATAAGCTGGTTCCAGACACTCTTTACCTTACTGTGAACCTCATTGATCGGTTTCTCTCAACAAGTTTGATTCAGAAACACAGGCTCCAGTTGCTTGGTGTTACTTGCATGTTCATTGCATCAAAATATGAAGAGATGTGTGCTCCTCGGGTGGAAGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTGGTAAAAATGGAGAAGGAAGTTTTAAACCTTCTGCGTTTTCAGTTATCTGTTCCCACAACCAAAACATTTATCAGGAGATTCATCCAAGCAGCGCAATCTTCTTACAAGGTTCCTCTTGCTGAACTGGAATTTCTGGCAAACTATTTAGCAGAACTCACTCTTGTTGAATACAGCTTCTTACAGTTTCTACCTTCTCGTGTGGCTGCTTCTGCTGTATTCCTTGCCAGATGGACCCTTAACCACTCAGAACATCCATGGACTACAACTCTGGAGCATTTTACAAACTACAAAGCTTCAGAGCTAAAACCAGTTGTTCTTGCACTGGAAGATCTGCAACTTAATACCAAAGGTTGTTCTCTCCATGCTATACGTGAGAAATATAAACATGAGAAGTTCAATGGTGTGGCAAAACTGTCCCCAAAACCGGTGCAGTCACTGTTCCAGGCTCAAGTGTAA 1437 0.4078 MSKANSTLCAKDEERPLRITRSRAKVLGGPSLENEGKRATTSKMVVSSENKTCVVVPHRKRRAGLTDVTNITAKPHDKRVKQSNFQAKGVYQKKNTKLTSDVSIEVSSAQEDGKEKVAEELTTIKMVESNDTIAAVTLVDEPTEHCMSNNISEHVMTETALSMQECVNSGELATSPSQSKDINMICEKIGASDCLTFVDIDKKLMDSQIWSAYAPDIYTKVRVSELEKRPSTNYMEKLQQDISPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSTSLIQKHRLQLLGVTCMFIASKYEEMCAPRVEEFCFITDNTYTKEEVVKMEKEVLNLLRFQLSVPTTKTFIRRFIQAAQSSYKVPLAELEFLANYLAELTLVEYSFLQFLPSRVAASAVFLARWTLNHSEHPWTTTLEHFTNYKASELKPVVLALEDLQLNTKGCSLHAIREKYKHEKFNGVAKLSPKPVQSLFQAQV* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3961 478 PIRSF Cyclin_A_B_D_E 22 477 IPR039361 -
Mtr3g3961 478 ProSitePatterns Cyclins signature. 247 278 IPR006671 -
Mtr3g3961 478 SMART cyclin_7 349 437 IPR013763 -
Mtr3g3961 478 SMART cyclin_7 252 336 IPR013763 -
Mtr3g3961 478 Gene3D - 216 464 - -
Mtr3g3961 478 Pfam Cyclin, C-terminal domain 345 467 IPR004367 -
Mtr3g3961 478 Pfam Cyclin, N-terminal domain 216 343 IPR006671 -
Mtr3g3961 478 PANTHER CYCLIN-A2-4 42 474 - -
Mtr3g3961 478 CDD CYCLIN 246 335 IPR013763 -
Mtr3g3961 478 Gene3D - 230 343 - -
Mtr3g3961 478 PANTHER CYCLINS 42 474 IPR039361 -
Mtr3g3961 478 MobiDBLite consensus disorder prediction 1 41 - -
Mtr3g3961 478 CDD CYCLIN 343 435 IPR013763 -
Mtr3g3961 478 SUPERFAMILY Cyclin-like 208 342 IPR036915 -
Mtr3g3961 478 SUPERFAMILY Cyclin-like 344 467 IPR036915 -
Mtr3g3961 478 SMART Cyclin_C_2 345 468 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3961 Mtr-Chr3 53342260 53347830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3961 10 474 Core Cell Cycle Gene Families AT5G25380 51.055 2.03e-149 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3961 K06627 - gmx:547780 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0183 1 2075313 2080602 Mtr3g3961 3 53342260 53347830 PCT