Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3960 ATGCTTGCGAAGGGTTCTGAACTTGGTGGGAATATTTGGAGAGAATTGCCAAGAAATTCTTCATCAGTTGTCTCAAACACTCCGCAAAAGAGATGTTTTGATAAATTATGCAGTCAACATGTAAGTAATCCAGCAGGATTCTCCACAGACTGGCGTTATCATCCTGAAATGGCATACAACCGTCACTGGATAAGAAAAAGAATTTTTGAAATCATTCAGAATGAGCAATTTGCCCCTATGCTGGAATTATTGCTACTTACCACTGCTGCTTCAAAGGAGGAATATATGAACCTAGAGACGTTGAATCAGCGTATGCAAGCTCTAGTGGGTCTTTCCAAGTCTGATGCCGCTGGTTATTATGACGTTCCAGAAGGGAGACTATCTGACCCTTTTATTGTTCATGGCCTGCCTTGCGTTCCTGATGATGGTTCGCCAACCCCCCTACTTGCTGATATGTGTGTGCTTCCTAACTTACCCGTTTTGTATGGTGGAAGCAATCTGGATGCTAACACCAGATCAAGTAGCAACTATTTTCCTCTGAAACACGCAAATAATGTGGAGATGAATCTGTCAAAACAGAGAGATTGTTTGGGGTTTATCCAAAATAACGAGTCTACGAGTTTTCCTACTTCAATGGGAAAGTCCATTCAATTTGAAGATTTACATTCGACATTCCCTAAACTTGTTTCAGCGGATATTTCGGAACAATCCAATCTTTCTCCTGGCACGAGTTCGTGCTTAGAACTGGAAGATACAAGGCGAAATAAATCCCAGGAGTTGGATTTTCAGAACAGTTTCACTCATGCCATGTTACAACCTACGAAAAGACAGAAAATGACAGAGTTTGCTTTTGACGTCTCTTGGGTTAATGATGCAAGTTCTGATCAATCGACTTACGAGATGGCTCAATCTTGTTCTTTTGAAACACTTTCAGAAGTGCAGCAACAGTTAGAGACTATCGAGTCTGGAATGATTCCCTCAAAAGGCTTAGAGTCTGGCATGATATACAGCAGAAACTCAATGGAAATCAACAGTAGGCCTACTCTCAGGAAGGAGCTTAAAGATATTGATGACGATGAAGAGGACATACAAGGCAGAACTGGATTCATCCAGGAGGGGGTAAATGCTAAAAAAGAACTTATTATTGTTCATGTGGGTGAAGAGGACATTCAAGGCAGAACTGGATTCATCCAGGATGGGATAAACGATAAAAAAGAAATCATTGAGTCAAAAGATGATCAAGAGAAGCAAACAAAATCCCCAAATACAATAGTTGAGGCTGTTTCCTTGATTGATTTGTTCACACGTGATCAAATAGAAGAACATATTAGTAGTCTGAGAAAGGAATCTGTTCAGATTACATCTAAGGAGGAAGCAGGAATTGATGCAAACACATGCCAATTATGTCAAAGGAAAAAGCTTTACTTTGCACCAGTGCCAATTTTTTGTTCATGTTGTGGCGTACGCATCAGGAGAACCTATTTTTGTAGAAAAGAAGAAGAATTTGATGCACAGGGTTGCATTTGCTCCGTGTGTTATAAAACTTCTAAAGGTGGGAAAATTACATTCAATGGGGCATTTGTTTCTAAGACAAATCTCGAAAAAAAGAATAACGATGAAGTTTTTGAAGAACCCTGGGTTGAATGCAATAAATGCAAAAGATGGCAGCATCAAATATGTGCACTCTACAACAACAAAAGAGATTTGGATTCCAGTGCTGAGTATATATGTCCTGTATGCCGCTTAAAAGAAATTGAAAACGGAATTCATGTTCCTTTACCAAAAGCTGCTAATTTTGGTGCTAAGGACTTGCCAAGAACCATGCTTAGTGACCACTTGGAAAAAAGACTTTTTGAGCGTCTCGTAGAAGAGAGAGCAAACTGGGAAAAAGTTGAAGGGAATGAGAATCTTGATAAGGTTTCAGCAGCAGAAAGTCTTTCTATTAGAGAAGTGTTATCTGTCGACAAACAATTGAAAGTGAATAAGCTGTTTCTGGACATCATTCCAGAGGAAAATTACCCTGCCGAATTCTCTTATAGATCAAGAGTTATTCTTCTGTTTCAGCAGATTGAAGGAGTAGATATATGCATTTTTGGAATGTACGCCCAGGAGTTCGGCTCCGAATGCGGCAATCCAAATCAGCGTTGTGTACACATTTCATATCTTGATTCTGTCAAGTATTTTAGGCCTGAGAGAAGGACAAAGAGTGGAGAAGCCCTTCGTACCTTTGTTTACCATGAGATATTGATTGGATACCTTGATTTTTGTAAGAAACGGGGTTTCTCAACTTGCTACATATGGGCCTGTGCTCCTTCAAGAAAAGGGGATGATTATATACTATATTGTCATCCTGAAGAGCAAAAGACTCCGAAGAATGATAAGCTACGCCGTTGGTATCTTTCTATGATAAAAAAGGCTACTGAAGAAAATATTATTGTTGGTTTAACCAACGTATATGATCATTTCTTTGTTCCTACTGAAAAAGGGAACTCCAAGGTGACAACTTCTCGATTGCCATACTTTGATGGAGACTACTGGTGCGGTTATGTTATGGAAGCAGCCAGGACCATTGAAAAAGAGAGCGGAGGAGACTATGAAAAGATGTTGAAGAAACAGGTACCAAATAGAGCTTTAAAGACCATGGGACATGCCAATCCTTCTAAAGACACCGCCAAAGACATTCTGGTGATGCAAAAAGTTGGCCAAAAGATATTGCCTACCAGGGAAAACTTCATCATAGCTCACTTGCAGTATTCATGCATACACTGCCATGAAGTGATAGTGTCTGGGAAGCGATGGTTTTGCACTGAATGCAAGAAATTTCAGGAGTGTGAAAGATGCCATAGTTCTGATGCACACATTTCAAAGAATGGCGAGGTGCATGCACTATGTCAGGCTGTTGTTGATGATATTCCCTCCAACACTATGCATAATGATATCATCCTTGAGAGTGGATTATTTGAAAATAGGAACAGCCTTTTGAGTTTTTGCCAGAAGTATCAATTTCAGTTTGACATACTCCGCCGTGCCAAGTATTCCTCAATGATGATCCTCTACCATTTAAACAACCCTACTCTGGTGACTGTTGGAAAATGTAGCATTTGTTGTGCACACAATATATTTCAAAAGTGCTGGAAATGTGAGATTTGTCCAGAATGTGCCATTTGCTCTGCTTGCTATAAGGATAGAGGTGCTAACTGCCATGAACACAAGTTGACTCAAAATGAACTCACATTGACTCAAAATTATTCAACACCACTATGTCAATTTGGGAATCGTGAGTCAAATGAGAAAACGATGCTGAAACTGCTGGATGTTTTGAAGCATGCATCTCAATGTCGCGCAACTAATGCTGAACCATGCTCTTATCCAAACTGTTCTCAAATCAAGAAGCTATTCTCTCATGCTCGCAGGTGCGAAATTCGAGTAAATCGGGGCTGTCAGCACTGTAAAAAGATATGGTTTATACTAACTGCCCACTCCAGGAATTGCAAAGACTCGGAATGTAGAATACCACGTTGCAGGGATCTGAAGAAGCATATAGAATCGAAAGCAATGCATTCCGAATCTTGGCGTGGAACTGCAGTTATTGAAAGCGACGCAGCAGTCGTTGATCAATGA 3621 0.401 MLAKGSELGGNIWRELPRNSSSVVSNTPQKRCFDKLCSQHVSNPAGFSTDWRYHPEMAYNRHWIRKRIFEIIQNEQFAPMLELLLLTTAASKEEYMNLETLNQRMQALVGLSKSDAAGYYDVPEGRLSDPFIVHGLPCVPDDGSPTPLLADMCVLPNLPVLYGGSNLDANTRSSSNYFPLKHANNVEMNLSKQRDCLGFIQNNESTSFPTSMGKSIQFEDLHSTFPKLVSADISEQSNLSPGTSSCLELEDTRRNKSQELDFQNSFTHAMLQPTKRQKMTEFAFDVSWVNDASSDQSTYEMAQSCSFETLSEVQQQLETIESGMIPSKGLESGMIYSRNSMEINSRPTLRKELKDIDDDEEDIQGRTGFIQEGVNAKKELIIVHVGEEDIQGRTGFIQDGINDKKEIIESKDDQEKQTKSPNTIVEAVSLIDLFTRDQIEEHISSLRKESVQITSKEEAGIDANTCQLCQRKKLYFAPVPIFCSCCGVRIRRTYFCRKEEEFDAQGCICSVCYKTSKGGKITFNGAFVSKTNLEKKNNDEVFEEPWVECNKCKRWQHQICALYNNKRDLDSSAEYICPVCRLKEIENGIHVPLPKAANFGAKDLPRTMLSDHLEKRLFERLVEERANWEKVEGNENLDKVSAAESLSIREVLSVDKQLKVNKLFLDIIPEENYPAEFSYRSRVILLFQQIEGVDICIFGMYAQEFGSECGNPNQRCVHISYLDSVKYFRPERRTKSGEALRTFVYHEILIGYLDFCKKRGFSTCYIWACAPSRKGDDYILYCHPEEQKTPKNDKLRRWYLSMIKKATEENIIVGLTNVYDHFFVPTEKGNSKVTTSRLPYFDGDYWCGYVMEAARTIEKESGGDYEKMLKKQVPNRALKTMGHANPSKDTAKDILVMQKVGQKILPTRENFIIAHLQYSCIHCHEVIVSGKRWFCTECKKFQECERCHSSDAHISKNGEVHALCQAVVDDIPSNTMHNDIILESGLFENRNSLLSFCQKYQFQFDILRRAKYSSMMILYHLNNPTLVTVGKCSICCAHNIFQKCWKCEICPECAICSACYKDRGANCHEHKLTQNELTLTQNYSTPLCQFGNRESNEKTMLKLLDVLKHASQCRATNAEPCSYPNCSQIKKLFSHARRCEIRVNRGCQHCKKIWFILTAHSRNCKDSECRIPRCRDLKKHIESKAMHSESWRGTAVIESDAAVVDQ* 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3960 1206 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 598 1026 IPR031162 GO:0004402
Mtr3g3960 1206 CDD PHD_HAC_like 508 580 - -
Mtr3g3960 1206 SMART KAT11_2 633 927 IPR013178 GO:0004402|GO:0006355|GO:0016573
Mtr3g3960 1206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 539 584 IPR013083 -
Mtr3g3960 1206 PANTHER HISTONE ACETYLTRANSFERASE HAC2 355 1179 - -
Mtr3g3960 1206 SUPERFAMILY FYVE/PHD zinc finger 543 583 IPR011011 -
Mtr3g3960 1206 Gene3D - 913 962 IPR043145 -
Mtr3g3960 1206 Pfam Histone acetylation protein 640 855 IPR013178 GO:0004402|GO:0006355|GO:0016573
Mtr3g3960 1206 ProSiteProfiles Zinc finger TAZ-type profile. 1093 1177 IPR000197 -
Mtr3g3960 1206 SUPERFAMILY RING/U-box 895 954 - -
Mtr3g3960 1206 ProSiteProfiles Zinc finger PHD-type profile. 506 583 IPR019787 -
Mtr3g3960 1206 SMART TAZ_2 1094 1175 IPR000197 -
Mtr3g3960 1206 PANTHER CBP/P300-RELATED 355 1179 IPR013178 GO:0004402|GO:0006355|GO:0016573
Mtr3g3960 1206 SUPERFAMILY RING/U-box 1009 1072 - -
Mtr3g3960 1206 SUPERFAMILY TAZ domain 1094 1178 IPR035898 -
Mtr3g3960 1206 Gene3D TAZ domain 1090 1203 IPR035898 -
Mtr3g3960 1206 Pfam TAZ zinc finger 1103 1174 IPR000197 -
Mtr3g3960 1206 SMART PHD_3 508 581 IPR001965 -
Mtr3g3960 1206 ProSiteProfiles Zinc finger ZZ-type profile. 915 987 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3960 Mtr-Chr3 53332526 53339450 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Mtr3g3960 HAT_KAT11 2.5e-27 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3960 K04498 - aprc:113866525 1124