Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3959 ATGGCGGTTCTGAGAATGGTTCACTCACACTCACAGTCTCAAAACAACAACAACAACAACATCAGTGGGACCCAACACTTCCTCCATGATTTTCTCGGCATGAAGCCAACTGATACTTCCATCGACGTTAGGTTACCGGAGGCATCAGCATCTGCCTCCTCCGCCGGTGCTCGTGGCCCTTTCTCCTCCACCTCCGAAACCGCTTCTGAAAAGCAGGTATCGAATCATCTTGAGGGAGTTCCATTCTATGGCCCAAGAAGTGATTTTTCTGGCACTGAGATAAGTAACAGACTAGTGGGGAATAAAAGAAGTAATTCTGATTCCTCATTTATGGGTTCCTCCAGAGATGCCTTTCAAATGGTCCCTGATTCCTTTCAAAACTCACATTTGATGAAGGTCCTCCGAAATGCATCTGGGGGAGAGAGATCCAGAAGGCCTAATGATGACGAAGTGTTACTTGGTATGCAGTCAATGAAGCCATCTTCTAGTTCTCAGATATTTCATGCTCCCGCCAACACGAAGATCGATGCGAATAAATGGGAACGGTCTATTCTCATGAATGCTGGCCCTTCCATGCAGCATCCTCCGCGTGGAGGACAGTTGACTCCTTTTGCACACCAACTAGCTTCAAACAAGCTTAGGGATACCATTGTCGGCCCTTCATTTATCTCTCAGCCTGCCGCTGATGAAGGATCTAGAACTGGAATCAAAGGCCCTGGAATTTTAAGTTCCATAAACACAGCTTCTACTGCTACTGATAAAATCTCATCTGTAGTGCTGCTCGGTGGAAGCAGACCAAAACCTCTAACTAACATAATTGAATCATCCACGCCCCCAAGTCAACATGGGCTAACAGCTGCCAGCCGCCAGATGACTATCTTTTATGGAGGTCAAGCTCATGTTTTTGATGATGTCCACAAACATAAGGCAGATGTTATAATGGCTTTGGCTGGGTCAAATGGTGGATCTTGGTCGACAGCGTTCTCACCGAAATCTACTGCAAAGCTGGTCAATGATAGTAACTTGCATAGTGGAGAAAATGAAACAGGGTTAGTGAGTAATGTGGCATTCCCAGAAGAGCTTCATGGGAAGTTGTCTGCTGCTGGCAGTTCTAGCCGCGCCGTTGGACCTGTTGACCGTGTATCTACTCCAACCGGGGCACATCAAGGAAGTATTTTTGCTAAAGATACCAGAAATTCGACGGTTCAAGCAGCAGATCCCAGTTCCGAAGACAAAAGAGCGCAGTGA 1248 0.4671 MAVLRMVHSHSQSQNNNNNNISGTQHFLHDFLGMKPTDTSIDVRLPEASASASSAGARGPFSSTSETASEKQVSNHLEGVPFYGPRSDFSGTEISNRLVGNKRSNSDSSFMGSSRDAFQMVPDSFQNSHLMKVLRNASGGERSRRPNDDEVLLGMQSMKPSSSSQIFHAPANTKIDANKWERSILMNAGPSMQHPPRGGQLTPFAHQLASNKLRDTIVGPSFISQPAADEGSRTGIKGPGILSSINTASTATDKISSVVLLGGSRPKPLTNIIESSTPPSQHGLTAASRQMTIFYGGQAHVFDDVHKHKADVIMALAGSNGGSWSTAFSPKSTAKLVNDSNLHSGENETGLVSNVAFPEELHGKLSAAGSSSRAVGPVDRVSTPTGAHQGSIFAKDTRNSTVQAADPSSEDKRAQ* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3959 415 MobiDBLite consensus disorder prediction 368 415 - -
Mtr3g3959 415 MobiDBLite consensus disorder prediction 1 24 - -
Mtr3g3959 415 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 56 414 IPR040390 -
Mtr3g3959 415 SMART tify_2 284 319 IPR010399 -
Mtr3g3959 415 MobiDBLite consensus disorder prediction 48 92 - -
Mtr3g3959 415 MobiDBLite consensus disorder prediction 55 74 - -
Mtr3g3959 415 Pfam tify domain 286 318 IPR010399 -
Mtr3g3959 415 MobiDBLite consensus disorder prediction 384 408 - -
Mtr3g3959 415 ProSiteProfiles Tify domain profile. 284 319 IPR010399 -
Mtr3g3959 415 MobiDBLite consensus disorder prediction 7 24 - -
Mtr3g3959 415 PANTHER PROTEIN TIFY 8 56 414 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3959 27 317 Tify Gene Family AT4G32570 40.193 5.22e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Mtr3g3959 tify 2.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3959 - - gmx:100819293 622.854