Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3953 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTTGTGAAGAGGGATTTGAAAGCTTCTGCTCAAGCTTTTCAAGCTGAGGGAAAAGTATCTTCTGACCCTGTTGCTATTGATGCTCCTGGAGGTTTTCTGTTTGAGTGGTGGTCGGTTTTCTGGGATATTTTCATTGCCAGGACTAATGAGAAGCACTCTGAGGTGGCTGCATCATATATAGAGACTCAATTAATCAAGGCAAGGGAACAACAGCAACAGCAACAACAACAACAGCAGCAGCCTCAACCTCAGCAGTCACAGCATGCGCAGCAGCAGCAGCAACAACACATGCAGATGCAACAACTTCTGATGCAGAGGCATGCACAACAGCAGCAACAGCAGCAGCAGCATCAACAACAGCCACAATCGCAGCCGCAGCAGCCACAACCACAACAACAGCAAAATAGAGATAGGACTCATCTGTTAAATGGTAGCGCAAATGGGTTAGCTGGAAACCCGGCAACTGCGAATGCAATAGCAACAAAGATGTATGAGGAAAGGTTAAAAGGTCCCCCACAGAGGGATTCTTTGGATGACGCAGCCATGAAGCAAAGATTTGGTGAGAACATGGGTCAGCTCTTGGACCCAAATCATGCCTCAATATTGAAGTCAGCTGCAGCTGGTGGTCAGCCTTCAGGGCAAGTTTTGCATGGCACTGCTGGTGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAACTACCAGGGTCTACAACGGATATAAAGAGTGAGATAAATCCTGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCATTGTTAGGAATTTCTGGATCAAATCAAGGGAACAACAATTTGACTTTGAAAGGGTGGCCACTCACAGGTTTGGAGCAACTTCGCTCTGGTTTACTTCAGCAGCAAAAGCCTTATATGCAGGCTCCTCAGCCGTTTCATCAACTACAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTTGCACAACAGAGTTTGGCATCACCATCTGCCAGTGAAGAAAGCAGAAGGCTGAGAATGCTTCTGAATAATAGGAATATTGGCCTAAATAAGGATGGCCTTTCGAACCCTGGGGGTGACATGTTATCGAATGTTGGATCACCTCTTCATGGCGGTGGCCCTCCTTTTCCCCGTGGAGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAGCAACAACAGCAGCAACATCAACAACAGTCGAGCATCAATGCACAACAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAATCATAGCATGCACCAGCAAGATAAGGTAGGGGGAGGTGGTGGTAGTGTCACCATGGATGGCAGCATGTCAAACTCATATAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGAAGAAAGAGAAAGCAACCTGTATCTTCTTCGGGTCCTGCAAATAGTTCAGGAACGGCAAATACGGCAGGCCCATCACCAAGTTCAGCCCCCTCAACTCCCTCAACTCATACTCCTGGAGATGCTGTTTCAATGCCTGCTTTGCCTCATAATAGTAGTTCTTCAAAGCCTCTAATGATGTTTAGCACTGATGGTACTGGAACTCTTACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGAAGGCTGATGTGGATCGCTTTGTGGACGATGGGTCTTTAGATGATAATGTAGAGTCTTTTTTATCGCAAGATGATACGGATCCTAGAGATCCTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGTGCAAGCTCAAGCAAAATTGCATGTTGCCATTTCTCATCTGATGGAAAATTACTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTATATGGTACGCGGATTCACTAAAACAAAAAGCTATTCTTGAAGAGCACTCAGCTTTGATAACTGATGTCCGTTTCAGTGCAAGCATGCCACGTCTAGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCTCTTCGCACTTTTACGGGACATTCTACATCTGTCATGTCACTAGATTTTCATCCAAATAAAGATGATCTTATATGCTCGTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAATGGCAGTTGTGTTAGAGTCTCTAAGGGTGGCACTACCCAGATGAGATTTCAACCTCGTCTAGGGAGGTATCTTGCTGCAGCAGCTGAAAACATTGTGTCTATACTTGATGTGGAAACACAGGCATGCCGATATTCATTAAAGGGTCACACAAAGACAATAGATTCTGTATGTTGGGATCCATCGGGAGAATTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGATTTGGACTCTTGAAGGGGAATGTGTTCATGAGCTTAGCTGTAATGGAAGTAAGTTTCACTCATGTGTTTTCCATCCAACATTCCCTTCACTGCTCGTCATTGGTTGTTACCAGTCATTGGAGCTGTGGAACATGGCTGAGAACAAGACAATGACTCTGTCTGCTCATGATGGCTTAATTACTGCCTTGGCGGTTTCAACCGTAAATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTCATCAAGCTTTGGAAGTAA 2694 0.4484 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQLLMQRHAQQQQQQQQHQQQPQSQPQQPQPQQQQNRDRTHLLNGSANGLAGNPATANAIATKMYEERLKGPPQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAGGQPSGQVLHGTAGGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLMLAQQSLASPSASEESRRLRMLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALPHNSSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDDTDPRDPVGRCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADSLKQKAILEEHSALITDVRFSASMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRIWTLEGECVHELSCNGSKFHSCVFHPTFPSLLVIGCYQSLELWNMAENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWK* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3953 897 CDD WD40 617 897 - -
Mtr3g3953 897 SMART WD40_4 695 735 IPR001680 GO:0005515
Mtr3g3953 897 SMART WD40_4 652 691 IPR001680 GO:0005515
Mtr3g3953 897 SMART WD40_4 817 856 IPR001680 GO:0005515
Mtr3g3953 897 SMART WD40_4 777 815 IPR001680 GO:0005515
Mtr3g3953 897 SMART WD40_4 858 897 IPR001680 GO:0005515
Mtr3g3953 897 SMART WD40_4 610 649 IPR001680 GO:0005515
Mtr3g3953 897 Gene3D - 753 897 IPR015943 GO:0005515
Mtr3g3953 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 702 740 - -
Mtr3g3953 897 MobiDBLite consensus disorder prediction 406 452 - -
Mtr3g3953 897 Pfam WD domain, G-beta repeat 698 735 IPR001680 GO:0005515
Mtr3g3953 897 Pfam WD domain, G-beta repeat 657 691 IPR001680 GO:0005515
Mtr3g3953 897 Pfam WD domain, G-beta repeat 619 648 IPR001680 GO:0005515
Mtr3g3953 897 Pfam WD domain, G-beta repeat 860 897 IPR001680 GO:0005515
Mtr3g3953 897 Pfam WD domain, G-beta repeat 780 814 IPR001680 GO:0005515
Mtr3g3953 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 617 648 IPR001680 GO:0005515
Mtr3g3953 897 MobiDBLite consensus disorder prediction 463 523 - -
Mtr3g3953 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 784 817 IPR001680 GO:0005515
Mtr3g3953 897 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 897 IPR044716 GO:0003714
Mtr3g3953 897 SMART Lish 8 40 IPR006594 GO:0005515
Mtr3g3953 897 ProSitePatterns Trp-Asp (WD) repeats signature. 678 692 IPR019775 -
Mtr3g3953 897 Gene3D - 594 752 IPR015943 GO:0005515
Mtr3g3953 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 865 897 - -
Mtr3g3953 897 SUPERFAMILY WD40 repeat-like 615 897 IPR036322 GO:0005515
Mtr3g3953 897 MobiDBLite consensus disorder prediction 91 156 - -
Mtr3g3953 897 Pfam LisH 10 36 IPR006594 GO:0005515
Mtr3g3953 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 865 897 IPR001680 GO:0005515
Mtr3g3953 897 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Mtr3g3953 897 MobiDBLite consensus disorder prediction 530 557 - -
Mtr3g3953 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 659 694 - -
Mtr3g3953 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 702 744 IPR001680 GO:0005515
Mtr3g3953 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 659 694 IPR001680 GO:0005515
Mtr3g3953 897 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 897 - -
Mtr3g3953 897 MobiDBLite consensus disorder prediction 368 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3953 Mtr-Chr3 53250549 53258556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3953 696 896 Miscellaneous Gene Families AT5G08390 24.638 1.04e-12 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mtr3g3953 WD40 0.0031 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3953 - - gmx:100816263 1269.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0189 1 2142155 2152729 Mtr3g3953 3 53250549 53258556 PCT