Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3950 ATGGAAGGTGGTGAACTGAGAGTGGCGAGTGGACGCGTAGGGAGCTCCAGCATATGGAGAAGTGGTGCAGTTGATGTATTTTCAGGATCGTCAAGAAGGGATGATGATGAACAAGAGCTTCAATGGGCTGCTATTGAGAAGCTTCCGACCTATCTACGCATGACTAGAGGTATACTGAATGAATCACAAAGTGAACAGCCTATAGAGATTGATATCAACAAACTTGGACCACTGCAGAGGAAGAATTTAGTGGAGAGACTTGTCAAGATTGCCGAGGAAGATAATGAGAAGTTCTTGTTGAAGTTAAGACAACGCATTGATCGGGTTGGACTTGATTTTCCGACAATTGAAGTCCGTTTTGAGCACTTGAATGTTGAAGCAGAAGCTCATGTGGGAAGCAGGGCATTGCCTACAATCCTCAACTTCTCCATTAATTTGTTGGAGGGATTCCTGAATAATCTTCACCTTATCCCGAGTCGAAAGAAGCCGCTAACGGTTCTTCATGATGTTAGTGGAATAATCAAGCCTAAAAGAATGACACTGCTCTTAGGTCCTCCAAGTTCTGGAAAGACTACATTGTTGTTGGCACTAGCCGGAAGACTCAGTAGAGATCTAAAATTTTCGGGGAGAGTTGCGTATAATGATCACGGGATGGAAGAATTCGTACCACAGAGAACATCAGCTTACATAAGTCAAACTGATTTACACATAGGAGAACTGACAGTGAGAGAAACATTGGCCTTTTCAGCAAGGTGTCAAGGAATAGGAACTCGTTATGATATGCTCGCAGAATTATCAAGAAGAGAAAAGGCTGAAAACATTAAACCAGATCCTGATCTTGATATTTATATGAAGGCTGAAGCACTAGAAGGCCAAGAAACCAACATAGTTACAGATTATATAATTAAGATTTTAGGACTAGATGTTTGTGCTGATACCATGGTAGGAGATGACATGATTCGAGGTATTTCGGGTGGACAAAAGAAGAGAGTCACAACTGGTGAGATGCTAGTTGGACCAGCAAGAGCGCTTTTCATGGACGAAATATCGACTGGTTTGGACAGTTCAACAACATTTCAAATGATTAATTCACTAAGGCAATCCATCCACATTCTGAATGGAACAGCTCTTATCTCTCTTCTACAGCCAACACCTGAAACTTACGATTTATTCGACGACATAATTCTCCTCTCAGACGGACAAATTGTGTATCAAGGTCCAAGGGAAAACGTCCTCGAATTCTTTGAGCATGTTGGTTTCAAATGTCCAGAGAGGAAAGGAGTAGCAGATTTTTTACAAGAAGTAACTTCAAGAAAAGATCAAGAACAGTACTGGTCAAATAAAGATAAGCCATATACCTTTATCACTGTTAGAGAATTCGCTGAAGAATTTCAGTTGTTTCATGTCGGTCAAAAACTCGGTGATGAACTTGGTACTCCATTTGATGCCTCCAAAGGCCACCCTGCCGTTTTAACCAAAAACAAGTATGGTGTGAGCAGGAAAGAACTCTTAAAAGCCTGCGTATCAAGAGAACTCTTACTTATGAAAAGGAATTCGTTTGTCTATATTTTCAAGATGTGGCAGTTGATCTTCACTGGCATCGTAACAATGACAATGTTCCTACGAACTGAGATGCACCGGAATACTGAAACAGATGGTGGGATCTATATGGGTGCTCTATTCTTCATACTAATTGTAATTATGTTCAATGGATACTCCGAGCTATCGATGTTCATAATGAAACTCCCAGTTTTCTATAAGCAAAGGGACCTTCTGCTTTTCCCTGCTTGGGCATATTCTTTGCCTACTTGGATCCTTAAGATTCCTATAACCTTTGTAGAAGTTGGTATTTGGGTTGTGTTGACTTACTATGTAATCGGATTTGATCCATGTTTTGAAAGGTTCATCAAACAGTACTTTTTGCTAGTTTGTATCAACCAGATGGCATCTGCACTTTTTCGATTTATTGGCGCAGTTGGGAGGAATGTTATTGTTGCAAACACAGTTGGATCATTTGCTTTACTTGCAGTTTTGGTCATGGGTGGATTCATCCTATCGAGAGTTGATGTGAAGAAGTGGTGGTTATGGGGTTACTGGGTATCCCCAATGATGTATGGACAAAATGCTATAGCTGTGAATGAATTCCTTGGAAAAAGTTGGTCCCATATTCCACCTGATTCAACAGAACCATTAGGAGTGCAGATCTTGAAGTCGCGTGGGATTTTCCCTGAAGCATACTGGTATTGGATTGGAGTTGGAGCTTCCATTGGATACATGTTACTATTCAACTTCCTTTTCCCTCTAGCCTTACATTATCTTGACTCATTTGGTAAACCGCAGGCTTTAATATCAGAAGAAGCATTGGCTGAGAGAAATGCTGCCACTGCTGGAAGCAAACAGATTATTGAACTGTCGCCTAAATTGGAATGTTCGTCAGGAAATGCAAGTCGAAGAAGTTTTTCTTCAACGACGCTATCAACAAAGGTAGGCAGCATTAATGCAGCTGATCACACTAGGAAGCGGGGGATGGTTCTTCCTTTCACTCCCCTTTCTATCACTTTTGATGAAATCGGATATGCCGTGGACATGCCGCAGGAAATGAAAGCCAAAGGTATTCCTGAAGATCGACTTGAACTTTTGACAGGTGTTAATGGAGCTTTTAGACCAGGAGTTCTGACAGCTCTAATGGGTATAAGTGGAGCTGGTAAAACAACTCTAATGGATGTGCTGTCTGGAAGGAAAACAACAGGATATGTTCAAGGACAAATCACTATATCCGGGTACCCTAAGAAGCAAGAAACATTTTCTCGGATATCAGGATACTGTGAGCAAACTGATATCCACTCTCCCCATGTTACTGTCTATGAATCTCTTGTTTATTCTGCATGGCTCCGGTTACCCCCCGAGGTTGATACTTCTACAAGAAAGATGTTCATTGAGGAAGTTATGGAGCTGATAGAGCTGACTTCAATAAGAGAAGCGCTTGTTGGATTACCTGGTGTGAATGGTCTGTCCACAGAACAGCGCAAGAGGTTAACGATTGCAGTTGAACTTGTTGCCAATCCATCTATTATATTCATGGATGAACCTACCTCTGGCCTTGATGCAAGAGCTGCTGCTATAGTAATGAGAACAGTGAGGAATACAGTGGACACAGGGAGAACTGTTGTCTGCACAATTCATCAGCCTAGTATTGATATATTTGATGCTTTTGATGAGCTACTTCTCTTGAAGCGTGGAGGAGAAGAAATATATGTGGGGCCATTAGGCCGACATTGTTCTCATCTGATCAACTACTTTGAGGGAATTAATGGAGTGCCAAAAATCAAGAATGGTTATAACCCTGCCACTTGGATGTTGGAGGTTACTTCAGAAGCACAAGAAGAAGCTCTCGGAATTAACTTCGCCGAACTATACAAGAACTCTGACTTATATAGGACAAACAAGGCCTTGATCAGGGAACTAAGTACTCCTCCAGAGGGTTCTAAAGACTTGTACTTCACAACACAGCACTCTCAGTCTTTCTTAACCCAATGTATGGCTTGCCTTTGGAAGCAGAACCTATCGTATTGGCGAAATCCCCCATACAGTGCAGTGAGACTTTTATTCACAACGGTCATAGCCTTCTTGTTCGGGACAATATTTTGGAATATTGGCTCAAAAAGGGAAAGAAGACAAGATCTATTTAACGCGATGGGGTCCATGTACGCTGCAGTGCTCTTCATTGGGGTACAAAATGCTACATCGGTGCAACCAGTTGTAGCCATTGAGAGAACAGTTTTCTATAGAGAAAAGGCTGCTGGAATGTACTCAGCATTGCCATATGCATTTGGACAGGTTGCTGTTGAGATCCCATACATACTCATACAGAGCCTTGTATATGGGGTTATAGTGTATACCATGGTTGGGTTTGAAAGGACACCTACCAAGTTCTTTTGGTATCTCTTCTTCATGTTCTTCACCTTTCTATACTTCACCTTTTTTGGAATGATGCTTGTCGGTGCTACACCAGATCACAATGTTGCTGCTATAGTTTCCTTTGGCTTCTACTTGCTATGGAACCTTTTCTCAGGATTCGTTATTCCCCGAACCAGGATGCCGGTATGGTGGAGATGGTTTTTCTGGATTTGTCCCATCTCTTGGACATTATATGGCTTGATTACAACACAATTTGGTGATGTTAACGAACGTATGGATACTGGAGAGACAGTGGAAGAGTTTGTTAGGAGTTATTTTGGTTACAGAGATGATTTCAAAGATGTAGCTGCAGCTGTGGTTGTTAGTTTTTCACTGATCTTTGGATCTGCCTTTGCTTTTTCAATTAAGGCATTTAATTTCCAAAAAAGATAA 4350 0.4143 MEGGELRVASGRVGSSSIWRSGAVDVFSGSSRRDDDEQELQWAAIEKLPTYLRMTRGILNESQSEQPIEIDINKLGPLQRKNLVERLVKIAEEDNEKFLLKLRQRIDRVGLDFPTIEVRFEHLNVEAEAHVGSRALPTILNFSINLLEGFLNNLHLIPSRKKPLTVLHDVSGIIKPKRMTLLLGPPSSGKTTLLLALAGRLSRDLKFSGRVAYNDHGMEEFVPQRTSAYISQTDLHIGELTVRETLAFSARCQGIGTRYDMLAELSRREKAENIKPDPDLDIYMKAEALEGQETNIVTDYIIKILGLDVCADTMVGDDMIRGISGGQKKRVTTGEMLVGPARALFMDEISTGLDSSTTFQMINSLRQSIHILNGTALISLLQPTPETYDLFDDIILLSDGQIVYQGPRENVLEFFEHVGFKCPERKGVADFLQEVTSRKDQEQYWSNKDKPYTFITVREFAEEFQLFHVGQKLGDELGTPFDASKGHPAVLTKNKYGVSRKELLKACVSRELLLMKRNSFVYIFKMWQLIFTGIVTMTMFLRTEMHRNTETDGGIYMGALFFILIVIMFNGYSELSMFIMKLPVFYKQRDLLLFPAWAYSLPTWILKIPITFVEVGIWVVLTYYVIGFDPCFERFIKQYFLLVCINQMASALFRFIGAVGRNVIVANTVGSFALLAVLVMGGFILSRVDVKKWWLWGYWVSPMMYGQNAIAVNEFLGKSWSHIPPDSTEPLGVQILKSRGIFPEAYWYWIGVGASIGYMLLFNFLFPLALHYLDSFGKPQALISEEALAERNAATAGSKQIIELSPKLECSSGNASRRSFSSTTLSTKVGSINAADHTRKRGMVLPFTPLSITFDEIGYAVDMPQEMKAKGIPEDRLELLTGVNGAFRPGVLTALMGISGAGKTTLMDVLSGRKTTGYVQGQITISGYPKKQETFSRISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDTSTRKMFIEEVMELIELTSIREALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYVGPLGRHCSHLINYFEGINGVPKIKNGYNPATWMLEVTSEAQEEALGINFAELYKNSDLYRTNKALIRELSTPPEGSKDLYFTTQHSQSFLTQCMACLWKQNLSYWRNPPYSAVRLLFTTVIAFLFGTIFWNIGSKRERRQDLFNAMGSMYAAVLFIGVQNATSVQPVVAIERTVFYREKAAGMYSALPYAFGQVAVEIPYILIQSLVYGVIVYTMVGFERTPTKFFWYLFFMFFTFLYFTFFGMMLVGATPDHNVAAIVSFGFYLLWNLFSGFVIPRTRMPVWWRWFFWICPISWTLYGLITTQFGDVNERMDTGETVEEFVRSYFGYRDDFKDVAAAVVVSFSLIFGSAFAFSIKAFNFQKR* 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3950 1449 Pfam ABC-transporter N-terminal 82 142 IPR029481 -
Mtr3g3950 1449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 877 1089 IPR027417 -
Mtr3g3950 1449 Gene3D - 151 461 IPR027417 -
Mtr3g3950 1449 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 852 1104 IPR003439 GO:0005524
Mtr3g3950 1449 Gene3D - 869 1094 IPR027417 -
Mtr3g3950 1449 CDD ABCG_PDR_domain2 849 1087 IPR034003 -
Mtr3g3950 1449 CDD ABCG_PDR_domain1 149 406 IPR034001 -
Mtr3g3950 1449 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 424 IPR003439 GO:0005524
Mtr3g3950 1449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 205 IPR027417 -
Mtr3g3950 1449 Pfam ABC transporter 167 349 IPR003439 GO:0005524
Mtr3g3950 1449 Pfam ABC transporter 881 1032 IPR003439 GO:0005524
Mtr3g3950 1449 Pfam Plant PDR ABC transporter associated 720 783 IPR013581 -
Mtr3g3950 1449 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 12 1449 - -
Mtr3g3950 1449 PANTHER ATP-BINDING CASSETTE TRANSPORTER 12 1449 - -
Mtr3g3950 1449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 424 IPR027417 -
Mtr3g3950 1449 SMART AAA_5 176 408 IPR003593 -
Mtr3g3950 1449 SMART AAA_5 889 1081 IPR003593 -
Mtr3g3950 1449 Pfam ABC-2 type transporter 382 435 IPR043926 GO:0140359
Mtr3g3950 1449 Pfam ABC-2 type transporter 503 715 IPR013525 GO:0016020|GO:0140359
Mtr3g3950 1449 Pfam ABC-2 type transporter 1177 1391 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3950 Mtr-Chr3 53223044 53230706 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3950 K08711 - gmx:100804030 2561.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3950 3 53223044 53230706 Mtr3g3950 3 53223044 53230706 ECH
Mtr1g0192 1 2199677 2209270 Mtr3g3950 3 53223044 53230706 PCT
Mtr3g3950 3 53223044 53230706 Mtr1g0191 1 2188244 2196823 PCT