Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3946 ATGTTGGCCAAGGCTAGCTTGGACGGAGATATTACTGCAACTGAGATGACAGGGTCAACAAATCATCATCATCTACCAGTTTCAGGTCATGAAAATGGCCAAGAAATGGCTGACATGCGCCAAGATTCCAAGAAGAACAAGGTGAAGGATCAAAGCAAGAAAACAGTACCCTTTTACAAGCTTTTCTCATTTGCAGACTCTTGGGATTATTTATTGATGTTTGTTGGGACTATCGGTGCTGTTGGGAATGGAGTCTCTATGCCTTTACTGACTATAATTATTGGAGATGCTATTGATGCTTTTGGAGGAAATGTTAACACCAACCAAGTAGTTCATCTAGTTTCCAAGGTGTCTCTCAAGTTTGCAATCATGGGTGCAGGCGCCTTTTTTGCAGCGTTTCTGCAGGTGGCATGTTGGATGGTCACCGGGGAGAGACAAGCTGCAAGAATACGGGCCTTATACCTCAAAGCAATTTTAAGGCAAGATATAAGCTTCTTTGACAGGGAAACAAACAGTGTTGAGGTTGTTGGAAGAATATCAGGTGACACAGTTCTTATTCAAGATGCCATGGGAGAGAAGGTAGGAAAATTCATACAGTATGTGTCATCTTTTTTAGGAGGTTTAGTTGTTGCATTCATCAAGGGTTGGCTTCTAAGCCTTGTCCTTCTATCTTCTCTTCCTCTTCTTGTCCTCTCTGGTTCCATAATGAGCTTTGCTTTCGCAAAGATGGCATCCCGAGGACAAGCAGCATATTCTGAAGCAGCAACTATAGTAGACCGGATAATTGGTTCAATTCGAACAGTTGCATCATTTACTGGTGAGAAGCAGGCCATAACTCAATACAATCAATCATTAACTAAATCTTACATAATTGGACTGCAAGAGGGATTGGCTATTGGTTTAGGCCTCGGCTTGGTTCGTTTATTTGTTTATTGTAGTTATGCTTTGGCTGTATGGTTTGGAGGGAAGATGATATTAGCGAAAGGTTATACAGGAGGGGAAGTCATAAGTGTATTTTTTGCAGTACTGACAGGTTCCTTGTCTCTAGGACAGGCATCTCCGAGCTTAACTGCATTTGCTGCTGGACAAGCTGCCGCCATTAAAATGTTTGAGATAATAAAGAGGCAGCCAAATATTGATGCTTATGACACTGCTGGTAGGCAGCTGGATGATATTTCTGGAGATATAGAACTTAGGGAAGTTTGCTTTGGTTATCCTTCAAGGCCAAATGAAATGATATTCGATGCACTTTCTATTTCAATATCAAGTGGCACTACCGCGGCTTTGGTAGGACAAAGTGGGAGTGGGAAATCGACGGTTATTAGTTTGATAGAGAGATTTTATGATCCACAGGGTGGTGAAATTCTCATTGACAATATCAACCTCAAAGAATTTCAACTGAAATGGATCAGACAAAAAATAGGCTTAGTCAGTCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAGAACATTGCCTATGGTAAGGATGGAGCAACAGATGAAGAAATCAGAGCTGCAACAGAACTAGCTAAAGCTGCTATCTTCATTGATAAGTTTCCCCATGGACTTGACACGATGGTTGGCGAACATGGAGCTCAACTTTCTGGAGGCCAAAAGCAAAGAATAGCTATAGCAAGAGCAATTCTGAAAGATCCAAGAATTCTACTCCTAGATGAAGCAACAAGTGCCCTTGACGCAGAGTCGGAAAGAGTGGTACAAGAGACGCTAGAAAGAATTATGATAAACCGAACAATGATCATTGTAGCCCACCGCCTAAGCACAATAAGGAATGCTGATATCATTGCCGTTATTCACCAAGGAAAAGTAGTAGAAAAAGGTACACATGATGAGCTCACCAATGATCCTGATGGAGCTTATAGTCAGCTCATTAGGCTGCAAGAAATTAAAAAGGATTCATCAGAACAGCATGGTGCTAATGACTCAGATAAGCTAGAAACATTTGTAGAATCTGGAAGAGAGTCTAGGCCTACCGCACTAGAAGGAGTGTCTGAATTTCTTCCTTCAGCAGCAGCATCACATAAAAGTAAGACTCCAGATGTCCCATTTCTTCGTCTCGCTTATCTTAACAAGCCTGAAATCCCGGCGCTACTCATTGGGACTCTAGCAGCAGCAGTAATTGGAGCAATGCAACCTATTCTGGGACTTTTAGTCTCCAAGATGATAAATACATTCTTTGAGCCTGCAGATGAACTTCGTAAAGATGTGAATTTTTGGGCATTAATGTTTGTGTTCTTTAGTGTGGCTTCATTCGTTTTTCAGCCGTTAAGGTCCTACTTTTTTGCTGTTGCTGGTTCTAAGTTGATAAAAAGGATCCGGTTAATGTGCTTTGAGAAAATAATTCACATGGAAGTAGGATGGTTTGATAAAGCTGAGAATTCAAGTGGTGCACTTGGTGCAAGGCTGTCAACCGATGCTGCTTCGATTCGAACTTTGGTTGGGGATGCACTCGGTTTGCTAGTTCAAGATATTGCCACTGTAATTACAGCCTTGGTAATTGGCTTTGAGACTAGCTGGCAGCTTTCTCTCATCATTCTTGTTTTGCTACCTCTACTGTTAGTAAATGGACATTTACAAATCAAATCCATGCAAGGATTCAGCACAGATGCAAGGAAACAGTATGAGGAAGCAAGTCAAGTAGCGAATGATGCAGTAGGGAATATCAGAACAGTTTCCGCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCAAAAGAAATGTGTAGTACCAGTACAGACAGGAAAAAGGCAGGGTATAGTTAGTGGAGTTGGTTTTGGCTTATCAATCTTCTTTATGTTCTGTGTTTATGCATGCAGTTTTTATGCTGGAGCACAACTTGTTAAGAATGGCAAAACCTCAATATCAGATGTTTTTCAAGTGTTTTTCTCTCTCACAATGGCAGCCGTCGCAATAGCTCAATCTGGATTCATGGCTGTAGGAGCTAGTAAAGCAAAAAGCTCTGTTGCTTCTATATTTGCTATTCTTGATCAGGAATCAAAAATAGACTCTAGTGAAGAATCAGGAATGACATTGGAAGATGTGAAGGGAGATATTGAGTTCCATCATGTCACTTTCAAGTATCCAACTAGACCTGATGTTCATATATTCAAAGATCTTTCTTTGACCATTCATTCAGGACAGACAGTTGCTCTAGTAGGTGAAAGTGGAAGTGGAAAGTCAACAGTGATATCATTGCTGCAAAGATTTTATGATCCAGATTCTGGTCAGATTAAACTGGATGGAACAGAAATCCAAAAGCTACAACTTAGATGGTTTAGGCAGCAAATGGGCCTGGTAACCCAGGAGCCTGTGCTGTTCAATGACACCGTGCGAGCCAACATTGCGTATGGAAAAGGTGGCAATGCAACTGAGGCTGAAATTATAGCTGCAGCAAAACTTGCAAATGCTCATAAGTTCATTAGCAGTTTGCAGCAGGGGTATGACACAATAGTAGGGGAGAGAGGGATACAACTTTCTGGAGGACAGAAGCAACGTGTGGCAATTGCAAGAGCCATAGTTAAGAATCCAAGAATATTACTACTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCATGATGCACTTGATAGATTGAGGGTGGACAGAACCACCATTGTGGTGGCTCATAGACTATCTACCATAAAGGGTTCAAATTCAATTGCAGTGGTTAAAAATGGAGTGATTGAAGAGAAAGGAAAGCATGAAACGTTGCTCAACAAGAGTGGTACCTATGCTTCTTTAGTAGCACTGCACACGACTAGCACAACAAAGGGTGGTACCTATTGCAATAGAATTTAA 3837 0.4128 MLAKASLDGDITATEMTGSTNHHHLPVSGHENGQEMADMRQDSKKNKVKDQSKKTVPFYKLFSFADSWDYLLMFVGTIGAVGNGVSMPLLTIIIGDAIDAFGGNVNTNQVVHLVSKVSLKFAIMGAGAFFAAFLQVACWMVTGERQAARIRALYLKAILRQDISFFDRETNSVEVVGRISGDTVLIQDAMGEKVGKFIQYVSSFLGGLVVAFIKGWLLSLVLLSSLPLLVLSGSIMSFAFAKMASRGQAAYSEAATIVDRIIGSIRTVASFTGEKQAITQYNQSLTKSYIIGLQEGLAIGLGLGLVRLFVYCSYALAVWFGGKMILAKGYTGGEVISVFFAVLTGSLSLGQASPSLTAFAAGQAAAIKMFEIIKRQPNIDAYDTAGRQLDDISGDIELREVCFGYPSRPNEMIFDALSISISSGTTAALVGQSGSGKSTVISLIERFYDPQGGEILIDNINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAATELAKAAIFIDKFPHGLDTMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLERIMINRTMIIVAHRLSTIRNADIIAVIHQGKVVEKGTHDELTNDPDGAYSQLIRLQEIKKDSSEQHGANDSDKLETFVESGRESRPTALEGVSEFLPSAAASHKSKTPDVPFLRLAYLNKPEIPALLIGTLAAAVIGAMQPILGLLVSKMINTFFEPADELRKDVNFWALMFVFFSVASFVFQPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVGWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDIATVITALVIGFETSWQLSLIILVLLPLLLVNGHLQIKSMQGFSTDARKQYEEASQVANDAVGNIRTVSAFCAEEKVMELYQKKCVVPVQTGKRQGIVSGVGFGLSIFFMFCVYACSFYAGAQLVKNGKTSISDVFQVFFSLTMAAVAIAQSGFMAVGASKAKSSVASIFAILDQESKIDSSEESGMTLEDVKGDIEFHHVTFKYPTRPDVHIFKDLSLTIHSGQTVALVGESGSGKSTVISLLQRFYDPDSGQIKLDGTEIQKLQLRWFRQQMGLVTQEPVLFNDTVRANIAYGKGGNATEAEIIAAAKLANAHKFISSLQQGYDTIVGERGIQLSGGQKQRVAIARAIVKNPRILLLDEATSALDAESEKVVHDALDRLRVDRTTIVVAHRLSTIKGSNSIAVVKNGVIEEKGKHETLLNKSGTYASLVALHTTSTTKGGTYCNRI* 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3946 1278 ProSitePatterns ABC transporters family signature. 535 549 IPR017871 GO:0005524
Mtr3g3946 1278 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 49 680 IPR039421 -
Mtr3g3946 1278 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 683 1267 IPR039421 -
Mtr3g3946 1278 MobiDBLite consensus disorder prediction 638 658 - -
Mtr3g3946 1278 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 705 991 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr3g3946 1278 CDD ABC_6TM_Pgp_ABCB1_D2_like 694 1009 - -
Mtr3g3946 1278 SUPERFAMILY ABC transporter transmembrane region 54 380 IPR036640 GO:0005524|GO:0016021
Mtr3g3946 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 634 IPR027417 -
Mtr3g3946 1278 Gene3D - 1016 1272 IPR027417 -
Mtr3g3946 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1015 1263 IPR027417 -
Mtr3g3946 1278 CDD ABC_MTABC3_MDL1_MDL2 1026 1261 - -
Mtr3g3946 1278 MobiDBLite consensus disorder prediction 12 27 - -
Mtr3g3946 1278 Gene3D ABC transporter type 1, transmembrane domain 60 995 IPR036640 GO:0005524|GO:0016021
Mtr3g3946 1278 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 74 361 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr3g3946 1278 SUPERFAMILY ABC transporter transmembrane region 692 1006 IPR036640 GO:0005524|GO:0016021
Mtr3g3946 1278 CDD ABC_6TM_Pgp_ABCB1_D1_like 73 357 - -
Mtr3g3946 1278 Pfam ABC transporter 415 563 IPR003439 GO:0005524
Mtr3g3946 1278 Pfam ABC transporter 1045 1194 IPR003439 GO:0005524
Mtr3g3946 1278 PANTHER TRANSPORTER ABC DOMAIN PROTEIN 49 680 - -
Mtr3g3946 1278 PANTHER TRANSPORTER ABC DOMAIN PROTEIN 683 1267 - -
Mtr3g3946 1278 Gene3D - 386 635 IPR027417 -
Mtr3g3946 1278 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 396 632 IPR003439 GO:0005524
Mtr3g3946 1278 MobiDBLite consensus disorder prediction 35 49 - -
Mtr3g3946 1278 Pfam ABC transporter transmembrane region 704 976 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr3g3946 1278 Pfam ABC transporter transmembrane region 73 347 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr3g3946 1278 MobiDBLite consensus disorder prediction 1 49 - -
Mtr3g3946 1278 SMART AAA_5 423 609 IPR003593 -
Mtr3g3946 1278 SMART AAA_5 1053 1247 IPR003593 -
Mtr3g3946 1278 ProSitePatterns ABC transporters family signature. 1166 1180 IPR017871 GO:0005524
Mtr3g3946 1278 CDD ABC_MTABC3_MDL1_MDL2 396 634 - -
Mtr3g3946 1278 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1026 1263 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3946 Mtr-Chr3 53188786 53194333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3946 54 1270 Calmodulin-binding Proteins AT2G36910 42.536 0.0 1010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3946 K05658 - gmx:100777713 1915.2