Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3941 ATGATGTATGAAAGCCACAACGATGATGATGCCTTAGATCATGAGAGAAATATGAACATGATGGAAAATCATAATGGAGATGGAATTCTCCCGGAACACGATGATGGCAGCATGTACAGCCTCACTGGCGGAGCTCCACTTCCGCCTCTAGGCGATTTCGGAGCCAAAAGAACCAAACTCCGTCGAAGAACCATCTCCCCCAATGACCGTCGCTACAGATGGTGGCAGATGTTTTTGGTGGTGTTAGTGTTCTACACTGCATGGGTGTCACCATTTGAATTCGGGTTCTTGAATGAACCTTTGAGACCTCTTTCGATTACTGATAATGTTGTGAATATAATATTTTTCTTTGATATTTGGTTAACTTTCTTTGTTGCTTACTATGACAAAACTACGTATTTGCTTGTGGATAGCCATGGGCCTATTGCGAGGAGATATCTAAGAACATGGTTTCTATTTGATCTCGTTTCCACTATTCCTTATGAACTCGCCCACAGATTATTTCCTAGACTCGACACTTATGGCTACTTCGGTATGCTTCGCCTTTGGCGTCTTCGCAGAGTCAGTGCCATGTTTGCAAGATTAGAAAAGGATAGACATTATAACTACTTCTGGTTGCGGTGTTCAAAGTTTATTTGTGTTACTCTATTTGTAGTACATAATGGAGCCTGCATTTTCTACTTTCTTGCCGACCATTATGCTAAAGACCTAAGCACAACGTGGCTTGGGCTTGTTCCTGATGCGGTTGACAAGAAGAATACGATGTCTCTCTACGTAGCATCAGTATACTGGTCCATTATCACTGTTTCAACAGTTGGTTATGGTGATCTGCATCCTGTAAATACAAGGGAGATGCTATTTGACATTTTCTTTATACTCTTTAATCAGGGACTTACTGCATACATCATTGGAAACATGACAAATCTAGCTGTTCATGCCACAAGCAGAACTAGGCAATATAGGTACACAGTACAAGCTGCCGCAAATTTTGCCCGCCGGAATAAGATACCTATCCACTTGGAAGAACAGATGCTTTCTCATTTGTTCATGAAGTACCGAACCGATTTGGAAGGAGTGCAGCAACAAGAGATTATTGATTCCCTTCCAAAAGCTATTCAATCTAGTATCTCATACTACTTATTCTTTTCAATGATGGACAACGTATACTTGTTTAAGGGAGTGTCAAAAGACCTAATTTTTCAATTGGTCACAGAGATGAAGGCGGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGGATAATGAAGCACCAACAGACTTTTATATTTTTGTCACCGGTGCCGCGGAACTTATCAAACGGGTGAATGGAGTAGAACATGTCGTTGGTAAGGTACATGCAAAAGATCTTGTTGGTGAAGTAGGAGTTCTATGTTACAGGCCGCAGCCGTATACAGTCCGGACTAAACGATTGAGCCAAATTTTGCGCTTGAGTCGTGCTACATTTCTAAATATTCTTCATTCAAGTGTTGGAGATGGGACAATAATCATGAACAACTTTCTAAATCATTTGCAAACTTCTGATATTCCAGGGTTGGATGCTATTTTGGAAGAAACAGAGGCCATGTTGGCTCGTGGTAAAACAGATCTACCTATCAGCACATGCTTTGCAGCAGGCAGAAGTGACAAACGACTGTTACAACGGTTGCTGAAGAAGGGCTCAGATCCAAATGAAACAGACAGGAATGGAAGAACAGCACTGCATATCTCAGCTTCTAATGGTAATGAGTCTTTTGTAACTCTGCTTCTAAAGTTTGGTGCTGATCCAAATGCCAAAGATTTGGATGGAAATATCCCACTATGGGAAGCAATGATCGGTGGACATGAATCTGTCAAAAAAATGCTCATAGACAAGGGTGCAGACATATTTTGTGTTGATGCAGGGCATCTAGCATGCTCTGCAGTTGATAAAAATAGCATTGAATTGCTTAAGGAACTCAAAGAACTCGGTGTGGATGTGACAAAACCCGAAATGAGCGGAATCACTGCCCTGCATAAAGCAGTAAGTGACAGAAATGTAGAGATGGTAAAGTTCCTTTTGGACCTAGGAGCTAAAGTTGATATGCAAGATGATCATGGCTGGACTCCAAGGGCTTTGGCAGAAAATCAAGGCCACGATGAAATTAAAAATATATTCCAAAACATTAAAGAAAACAAACAAACAGCACCTGTTAGTCCAATACCAGAAGATGGTACGCCTAATGTGTCGTCGTTTCAAAGTGCACCCGTTATGCCTGATGCTCGTGGATCCCTAGATAACATGCTACAACCACCTAATCAAGAAGAGTTGCCATGGTTAGATAGTCATCGGAGGCAAAGGGCCAACACCTTTCATAATTCAATTTTCGGGATGATATCTGCTGCCAATTACGATAAAAAAGATCTTGGGGTATCTGAAAGCAGAATCACGAATACTGCGAACATGAATGGAATAGTAGCTAGAGTGACACTTATTTGTCCAGAAAAAGGTGAACATGCTGTAAAGCTTGCTTTTCTGCCCGATTCCCTCGAAGAACTGCTAGACATTGGTGCCAAAAAGTTTGATTTCTCACCCACCAAAATTTTGACCAAAGAAGGAGCTGAAATTGACGATATAGATCTTATAAGAGATGGTGATCATCTTATTATTGCAAAGTGA 2655 0.4102 MMYESHNDDDALDHERNMNMMENHNGDGILPEHDDGSMYSLTGGAPLPPLGDFGAKRTKLRRRTISPNDRRYRWWQMFLVVLVFYTAWVSPFEFGFLNEPLRPLSITDNVVNIIFFFDIWLTFFVAYYDKTTYLLVDSHGPIARRYLRTWFLFDLVSTIPYELAHRLFPRLDTYGYFGMLRLWRLRRVSAMFARLEKDRHYNYFWLRCSKFICVTLFVVHNGACIFYFLADHYAKDLSTTWLGLVPDAVDKKNTMSLYVASVYWSIITVSTVGYGDLHPVNTREMLFDIFFILFNQGLTAYIIGNMTNLAVHATSRTRQYRYTVQAAANFARRNKIPIHLEEQMLSHLFMKYRTDLEGVQQQEIIDSLPKAIQSSISYYLFFSMMDNVYLFKGVSKDLIFQLVTEMKAEYFPPKEDVILDNEAPTDFYIFVTGAAELIKRVNGVEHVVGKVHAKDLVGEVGVLCYRPQPYTVRTKRLSQILRLSRATFLNILHSSVGDGTIIMNNFLNHLQTSDIPGLDAILEETEAMLARGKTDLPISTCFAAGRSDKRLLQRLLKKGSDPNETDRNGRTALHISASNGNESFVTLLLKFGADPNAKDLDGNIPLWEAMIGGHESVKKMLIDKGADIFCVDAGHLACSAVDKNSIELLKELKELGVDVTKPEMSGITALHKAVSDRNVEMVKFLLDLGAKVDMQDDHGWTPRALAENQGHDEIKNIFQNIKENKQTAPVSPIPEDGTPNVSSFQSAPVMPDARGSLDNMLQPPNQEELPWLDSHRRQRANTFHNSIFGMISAANYDKKDLGVSESRITNTANMNGIVARVTLICPEKGEHAVKLAFLPDSLEELLDIGAKKFDFSPTKILTKEGAEIDDIDLIRDGDHLIIAK* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3941 884 SUPERFAMILY Voltage-gated potassium channels 67 309 - -
Mtr3g3941 884 ProSiteProfiles cAMP/cGMP binding motif profile. 390 509 IPR000595 -
Mtr3g3941 884 PANTHER POTASSIUM CHANNEL AKT1 8 884 IPR045319 GO:0005249|GO:0006813
Mtr3g3941 884 ProSiteProfiles KHA domain profile. 820 884 IPR021789 -
Mtr3g3941 884 PRINTS EAG/ELK/ERG potassium channel family signature 85 92 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr3g3941 884 PRINTS EAG/ELK/ERG potassium channel family signature 108 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr3g3941 884 PRINTS EAG/ELK/ERG potassium channel family signature 258 275 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr3g3941 884 PRINTS EAG/ELK/ERG potassium channel family signature 302 311 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr3g3941 884 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 8 884 - -
Mtr3g3941 884 Gene3D - 537 720 IPR036770 -
Mtr3g3941 884 Pfam KHA, dimerisation domain of potassium ion channel 820 882 IPR021789 -
Mtr3g3941 884 Pfam Cyclic nucleotide-binding domain 410 494 IPR000595 -
Mtr3g3941 884 Gene3D Jelly Rolls 356 514 IPR014710 -
Mtr3g3941 884 ProSiteProfiles Ankyrin repeat region circular profile. 601 628 - -
Mtr3g3941 884 ProSiteProfiles Ankyrin repeat profile. 568 600 IPR002110 GO:0005515
Mtr3g3941 884 SMART cnmp_10 390 507 IPR000595 -
Mtr3g3941 884 Pfam Ankyrin repeats (3 copies) 635 714 IPR002110 GO:0005515
Mtr3g3941 884 Pfam Ankyrin repeats (3 copies) 543 629 IPR002110 GO:0005515
Mtr3g3941 884 ProSiteProfiles Ankyrin repeat profile. 601 633 IPR002110 GO:0005515
Mtr3g3941 884 SUPERFAMILY cAMP-binding domain-like 315 510 IPR018490 -
Mtr3g3941 884 CDD CAP_ED 390 493 IPR000595 -
Mtr3g3941 884 ProSiteProfiles Ankyrin repeat profile. 665 697 IPR002110 GO:0005515
Mtr3g3941 884 Pfam Ion transport protein 72 317 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mtr3g3941 884 ProSiteProfiles Ankyrin repeat region circular profile. 665 697 - -
Mtr3g3941 884 SMART ANK_2a 531 564 IPR002110 GO:0005515
Mtr3g3941 884 SMART ANK_2a 601 630 IPR002110 GO:0005515
Mtr3g3941 884 SMART ANK_2a 632 661 IPR002110 GO:0005515
Mtr3g3941 884 SMART ANK_2a 665 694 IPR002110 GO:0005515
Mtr3g3941 884 SMART ANK_2a 568 597 IPR002110 GO:0005515
Mtr3g3941 884 ProSiteProfiles Ankyrin repeat region circular profile. 568 599 - -
Mtr3g3941 884 SUPERFAMILY Ankyrin repeat 542 720 IPR036770 -
Mtr3g3941 884 Gene3D - 74 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3941 Mtr-Chr3 53153390 53159286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3941 35 884 Ion Channels AT2G25600 54.176 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3941 K21867 - gmx:100786870 1086.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3941 3 53153390 53159286 Mtr3g3941 3 53153390 53159286 ECH
Mtr1g0201 1 2281737 2287432 Mtr3g3941 3 53153390 53159286 PCT