Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3935 ATGAAGGCCATGACTAAGAAAAAGAATCCCCTGGTGTTTATGGATGTATCTATCGATGGGGATCCCGTTAAAAGGATGGTTTTTGAGCTTTTCCATGATGTTGCTCCCAAAACTGCAGAAAATTTCCGTGCATTATGTACAGGAGAGAGAGGTATCAGTTCAAATACTGGAAAATTGCTTCACTACAAGGGTTCTTTCTTCCATCAAATTATGAAAGGCTCCATCGTGAAGGGTGGTGATTTTGTCAATCGTAATGGGACTGGTGGAGAAAGCATATATGGTTCAAACTTTCCTGACGAGTCACCTAGGCTAAAGCATGATGGCCCTGGGCTTTTGTCAATGGCAATTGCTGACCGTGATAAGCTTGGTTCTCATTTTATTATCACTTTGAAAGCTGATCACCATCTTGACAGGAAATATGTAGTCTTTGGGAGGCTTGTTGAAGGGCTTAAGGTATTGAAGAAAATTGAAGATGTTGGGGATGATGAAGGGCATCCAACTGTAACTGTTAAAATTATTAACTGTGGTGAATATAATGAGGATGGGAAGAAGGTAAATAAATCAAAAACAGGAAAGGATGGAGCCTGTGAAGGCAATAATCTTGAAACACGGAGGAAGGGAAAGCTCAAGAGGTCTTCAAAAGACAGAAGGAAAAGGAAAAGATACCACTCATCTGAATCAGAGAGCTCTTCAGATTCAGACATGGAATCTTCGGAAACTGATAGTGATTCTGACTCAGATATGTCCTCATCATCTAATATAAGTTCATCTAGTGATGACAGGCGAAGAAAGAGAAAGAGATCCAAGAAAGATAAATATAAACGTGGAAAAAGAAGAGATAAACGCCGTGACAAAAGGCGAAGAAGACGGGATAAGAGATCGAAGCGCAGATCAAAAAGGGAATCTGGCAGTGATTCAGATAGCGAGAGTAGCAGTAGCTCTGATGATGAAAGTCTTGATACTCAACAGCAAGAGCTGAAGCGAAAAGATCGTTATCAGAAAAAAGCTGAACTGAAGTCTCCCTCAGTTGTGGAGAAAGATGCACCCACCATTCATCATAGAAAGGAAGAGGCAGGTATGCCAGCGAGCAATGTAAAAACTGTAAAGGAAAATGGAGAGCGGCATAGCAATGGTACTGGAGCTGCCTATAGATCTGACAGAAGTGAAGAGAGGCAGCCTGACGTGATGGATGTTCATTTGGGCAAATCTAGGAGTCGAAGCACAAGCCCTAAGCGACCCATGAGTAAGAGTATGAGTATTAGTCCTAGGAGGAGTAGGAGCAAGAGCCGGAGCATTACCCCAAAAAGAAGATTGAGAAAAAGTCCAAGTGTCAGTAGAAGCCCTCCTCGTCTATCAAGGAGGAGTTTGAGCAGTAGTCCTGTCAGAAGCATGGACAGGAGTCCTGTTAGGAGCATCGGCAGGAGTCCAAGAAGAAGCATCAGCAGGAGCCCGGTGAGGGGCAGGAAGGGGAGAAAGGTCGATAGAAGTCCTGTGATAACTCGTTCTCTTAAAAGTGTCAGCAAGAGCCCTGTAAGATCCCGCCGGAGCAGGAGTTCTCCCAGAGTATCATCACGAAAGAGCGTAAGTCGCAGTCCAGTTAGATCACCTGCAAGAAGCTTAAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCATAAGTCACAGTCCAGTTAGAGCGCCTGCAAGAAGCTTAAGCAGAAGCCCTGCAAGAGTGTCAAGAAAAAACATAAATCGCAGTCCATTAAGGAAGAGTTCAAGTCGCAGTCCAATTAAATCACCTGCAAGAAGCTTAAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCATAAGTCGCAGTCCAGTTAGAGCGCCTGCAAGAAGCTTAAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCATAAGTCGCAGTCCAGTTAGAGTGCCTGCAAGAAGCTTAAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCATAAGTTGCAGTCCAGTTAGATCACCTGCAAGAAGCTTAAGCAGAAGCTCTGGTAGGGTCCCCTCAAAGAGAAGCATTAGCCGAAGTCCTGTCAGGGCACCCAGTAGAAACAATCGCCGCAGTTATTCTAGGAGTCCTAGCCCTGTACGTAGGAGAAGAACACCTCGTGGGGGTAGTTTGTCTAGAAGTGCTTCACCTGATGCTTCGCCAAAGCGTATCAGAAGGGGAAGAGGTTTCAGTGAACGATACTCCTATGCAAGAAGGTATAGAACCCCTTCCCGGTCTCCTGTGAGGTCATACCGGTACAATGGAAGAATTGATCGTGACAGATATACAAGTTACAGAAGGTATTCCCCTAGGCGTTTCAGAAGCCCACCACGGGGAAGAACTCCTCCAAGGTACCGAAGGAGAAGCCGATCACCATCTGTTTCGCCCAGCCCACGCTACCGAGCTCGAAGATATAGCAGAAGCCGCAGCCCAGTTCGCATTCGCTCCCCAGTTCGGAGCACTTCCCCCGATCGATCTCGCCCCTCTCCTCGTGTAGAAAGGCATTCTTCGTACTCCCGGAGCAGGAGTCCAGTGAAATCTAGGTCTTCTGTAGAATCACCATCTCCAAGAAAAGCAAGTAGAGACAGGTCAGCTTCATCATCCAGAAGCCCAGATGGAAAGAGAGGCTTGGTCTCATACGGTGATGGTTCTCCTGACTCGGGCCAAAGGTGA 2688 0.4617 MKAMTKKKNPLVFMDVSIDGDPVKRMVFELFHDVAPKTAENFRALCTGERGISSNTGKLLHYKGSFFHQIMKGSIVKGGDFVNRNGTGGESIYGSNFPDESPRLKHDGPGLLSMAIADRDKLGSHFIITLKADHHLDRKYVVFGRLVEGLKVLKKIEDVGDDEGHPTVTVKIINCGEYNEDGKKVNKSKTGKDGACEGNNLETRRKGKLKRSSKDRRKRKRYHSSESESSSDSDMESSETDSDSDSDMSSSSNISSSSDDRRRKRKRSKKDKYKRGKRRDKRRDKRRRRRDKRSKRRSKRESGSDSDSESSSSSDDESLDTQQQELKRKDRYQKKAELKSPSVVEKDAPTIHHRKEEAGMPASNVKTVKENGERHSNGTGAAYRSDRSEERQPDVMDVHLGKSRSRSTSPKRPMSKSMSISPRRSRSKSRSITPKRRLRKSPSVSRSPPRLSRRSLSSSPVRSMDRSPVRSIGRSPRRSISRSPVRGRKGRKVDRSPVITRSLKSVSKSPVRSRRSRSSPRVSSRKSVSRSPVRSPARSLSRSPVRVSRKSISHSPVRAPARSLSRSPARVSRKNINRSPLRKSSSRSPIKSPARSLSRSPVRVSRKSISRSPVRAPARSLSRSPVRVSRKSISRSPVRVPARSLSRSPVRVSRKSISCSPVRSPARSLSRSSGRVPSKRSISRSPVRAPSRNNRRSYSRSPSPVRRRRTPRGGSLSRSASPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRIDRDRYTSYRRYSPRRFRSPPRGRTPPRYRRRSRSPSVSPSPRYRARRYSRSRSPVRIRSPVRSTSPDRSRPSPRVERHSSYSRSRSPVKSRSSVESPSPRKASRDRSASSSRSPDGKRGLVSYGDGSPDSGQR* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3935 895 MobiDBLite consensus disorder prediction 568 607 - -
Mtr3g3935 895 MobiDBLite consensus disorder prediction 522 550 - -
Mtr3g3935 895 MobiDBLite consensus disorder prediction 776 792 - -
Mtr3g3935 895 MobiDBLite consensus disorder prediction 428 443 - -
Mtr3g3935 895 MobiDBLite consensus disorder prediction 445 465 - -
Mtr3g3935 895 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 13 177 IPR002130 GO:0000413|GO:0003755
Mtr3g3935 895 MobiDBLite consensus disorder prediction 320 360 - -
Mtr3g3935 895 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 4 450 - -
Mtr3g3935 895 MobiDBLite consensus disorder prediction 384 401 - -
Mtr3g3935 895 SUPERFAMILY Cyclophilin-like 4 179 IPR029000 -
Mtr3g3935 895 MobiDBLite consensus disorder prediction 649 700 - -
Mtr3g3935 895 MobiDBLite consensus disorder prediction 860 874 - -
Mtr3g3935 895 MobiDBLite consensus disorder prediction 757 772 - -
Mtr3g3935 895 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP95 4 450 - -
Mtr3g3935 895 MobiDBLite consensus disorder prediction 724 744 - -
Mtr3g3935 895 MobiDBLite consensus disorder prediction 831 845 - -
Mtr3g3935 895 Gene3D - 1 178 IPR029000 -
Mtr3g3935 895 MobiDBLite consensus disorder prediction 407 427 - -
Mtr3g3935 895 MobiDBLite consensus disorder prediction 262 297 - -
Mtr3g3935 895 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 14 176 IPR002130 GO:0000413|GO:0003755
Mtr3g3935 895 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 30 45 IPR002130 GO:0000413|GO:0003755
Mtr3g3935 895 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 67 79 IPR002130 GO:0000413|GO:0003755
Mtr3g3935 895 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 125 IPR002130 GO:0000413|GO:0003755
Mtr3g3935 895 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 125 137 IPR002130 GO:0000413|GO:0003755
Mtr3g3935 895 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 153 IPR002130 GO:0000413|GO:0003755
Mtr3g3935 895 MobiDBLite consensus disorder prediction 180 895 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3935 Mtr-Chr3 53102625 53110427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3935 29 173 U-box Gene Family AT5G67530 40.136 1.96e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3935 K09566 - gmx:100785820 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3935 3 53102625 53110427 Mtr3g3935 3 53102625 53110427 ECH