Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3922 ATGGTAGAAACGACACACGTAGAACATGATGCAAATCTTCACCATTCATCACCACCTCTGGGCACCGAGAATGTGAATATTACATCCAATCCAATGGTTGAAGGTGTAGAAAAATTGGTGAATGATATTGTGCAAGAGAATAATGTTAGTAATGTACCACACTTGGAAATGGAGTTTGAGTCTGAGGCCTTCACATATGAATTTTATAATGAGTATAGTAAGAAATGTGGTTTTGGTATCCGTCGAGAATATGCAAATAAAAGCAAAAAAGATGGAGTTCTTACTTCAAGAAAATTTGTGTGCTCCAAAGAGGGTAGACGCGGTGCTGACAAACGTGATTACTTGACAAAAGATGCTCGAGCAGAAACTAGAACATGA 378 0.381 MVETTHVEHDANLHHSSPPLGTENVNITSNPMVEGVEKLVNDIVQENNVSNVPHLEMEFESEAFTYEFYNEYSKKCGFGIRREYANKSKKDGVLTSRKFVCSKEGRRGADKRDYLTKDARAETRT* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3922 125 Pfam FAR1 DNA-binding domain 67 125 IPR004330 -
Mtr3g3922 125 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 26 125 - -
Mtr3g3922 125 MobiDBLite consensus disorder prediction 103 125 - -
Mtr3g3922 125 MobiDBLite consensus disorder prediction 1 25 - -
Mtr3g3922 125 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 26 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3922 Mtr-Chr3 53026799 53027314 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr3g3922 FAR1 2.1e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3922 - - mtr:MTR_5g015480 231.491