Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3920 ATGGGAGAACCAAAGGACGAAACTTACGAGGAAGAGCTTCTTGATTACGAGGAAGAAGAAGACAAAGCTCCCGATACCAACGGAGCTAAAGTCAACGGTGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTTAGAGACTTTCTTCTCAAACCAGAGCTTCTTCGGGCTATCGTTGATTCGGGTTTTGAACATCCTTCTGAAGTGCAACATGAGTGCATACCTCAAGCAATTCTAGGAATGGATGTAATTTGTCAAGCTAAATCTGGAATGGGAAAGACTGCTGTCTTTGTTCTCTCGACTTTGCAGCAGATTGATCCTGTTCCAGGCCAAGTTTCTGCACTTGTTCTGTGTCACACAAGAGAACTAGCTTACCAGATATGCCACGAGTTTGAGAGGTTTAGTACCTACTTACCCGATCTGAAGGTTGCTGTCTTTTATGGTGGGGTCAATATCAAAGTTCACAAGGATCTATTGAAAAATGAGTGCCCTCAAATTGTTGTTGGAACGCCTGGAAGAATACTAGCATTGGCTAGGGAGAAGAATCTTTCATTGAAGAATGTTCGTCATTTTGTTTTAGATGAGTGTGATAAGATGCTCGAATCACTGGACATGAGGAAAGACGTTCAAGACATTTTCAAGTTGACTCCCCACGATAAGCAAGTTATGATGTTTTCAGCAACACTCAGCAAGGAAATCCGCCCAGTCTGCAAAAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAAGCCAAGTTAACCCTTCATGGACTGGTGCAGCACTACATCAAATTGAAAGAGGAAGAGAAAAACCGCAAGTTGAATGATCTTCTTGATGCCCTAGACTTCAACCAAGTTGTTATCTTTGTGAAAAGTGTTAGTAGAGCCGCTGAGCTGGACAGACTACTTATAGAGTGCAATTTTCCTTCTATATGCATTCACTCTGGCATGTCCCAAGAAGAAAGGTTGAAGCGTTATAGAGGTTTCAAGGAGGGGCATTCTAGGATTCTTGTTGCTACAGATTTGGTTGGTAGAGGGATTGACATTGAACGTGTCAATATTGTTATAAACTATGACATGCCTGATTCTGCAGACACTTACTTGCACAGGGTTGGCCGAGCTGGAAGATTTGGAACCAAAGGCCTTGCAATTACATTTGTTTCGTGTTCTTCTGATGTTGATGTTCTCAACAATGTTCAGTCAAGGTTTGAAATAGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACATGCCATCATAG 1284 0.4167 MGEPKDETYEEELLDYEEEEDKAPDTNGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPQIVVGTPGRILALAREKNLSLKNVRHFVLDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDRLLIECNFPSICIHSGMSQEERLKRYRGFKEGHSRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEIDIKQLPEQIDTSTYMPS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3920 427 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Mtr3g3920 427 SMART ultradead3 65 266 IPR014001 -
Mtr3g3920 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Mtr3g3920 427 Gene3D - 42 258 IPR027417 -
Mtr3g3920 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 396 IPR027417 -
Mtr3g3920 427 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Mtr3g3920 427 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 422 - -
Mtr3g3920 427 Gene3D - 259 426 IPR027417 -
Mtr3g3920 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 423 IPR001650 -
Mtr3g3920 427 SMART helicmild6 302 383 IPR001650 -
Mtr3g3920 427 MobiDBLite consensus disorder prediction 1 31 - -
Mtr3g3920 427 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Mtr3g3920 427 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 27 422 - -
Mtr3g3920 427 MobiDBLite consensus disorder prediction 1 22 - -
Mtr3g3920 427 CDD SF2_C_DEAD 263 392 - -
Mtr3g3920 427 CDD DEADc_DDX39 45 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3920 Mtr-Chr3 53009595 53015453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3920 1 427 Eukaryotic Initiation Factors Gene Family AT5G11200 81.876 0.0 751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3920 3 53009595 53015453 Mtr3g3920 3 53009595 53015453 ECH
Mtr3g3920 3 53009595 53015453 Mtr1g0218 1 2496475 2504971 ECH
Mtr1g0218 1 2496475 2504971 Mtr3g3920 3 53009595 53015453 PCT