Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3915 ATGGTACAACAAACAAAGAAGTTCAGAGGAGTCAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCTTTGTTAAAGAGAAGGGTGTGGTTAGGAACATTTGAGACGGCAGAAGCAGCAGCAAGAGCATATGATCAAGCTGCAATTTTGATGAATGGTCAAAGTGCAAAGACTAATTTCCCTGTGACAAAGAATCAAGGTGAAGAAGTTGCTAGTGACACCCCTTATAATGGTGGTGGTGGTGATGATTCTTTCTTGTCTCCCAAGGCACTCTCTGAGCTACTCAGCACAAAGCTTAGAAAGTATTGCAAAGACCCTTCTCCATCACTTACTTGTTTGAGGCTAGATAATGATAATTCTCACATTGGAGTGTGGCAAAAAAGAGCTGGACCACATTCTGATTCTAATTGGGTCATGAGGGTTGAACTTGGTGGGAAGAAGAAGACTATAGAGTCAGAAGAGATAGGATCAAAACAACACACTATTGATGGTGGTAATAATAGTAATGCTGATAATGAAAATAGGGTGGTAGTAGAAGAAGAGGAAAGAGTTGCTTTGCAGATGATTGAAGAGTTACTTAATTGGAACTATCCATGTGGATCAACTTCAAGTAATAACTCTCAGCAGGAAGAAAATAGAAATATTTCATGTCATGGACATGGTTCTTAA 678 0.4086 MVQQTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQSAKTNFPVTKNQGEEVASDTPYNGGGGDDSFLSPKALSELLSTKLRKYCKDPSPSLTCLRLDNDNSHIGVWQKRAGPHSDSNWVMRVELGGKKKTIESEEIGSKQHTIDGGNNSNADNENRVVVEEEERVALQMIEELLNWNYPCGSTSSNNSQQEENRNISCHGHGS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3915 225 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Mtr3g3915 225 MobiDBLite consensus disorder prediction 204 219 - -
Mtr3g3915 225 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Mtr3g3915 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 205 - -
Mtr3g3915 225 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Mtr3g3915 225 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Mtr3g3915 225 MobiDBLite consensus disorder prediction 162 176 - -
Mtr3g3915 225 MobiDBLite consensus disorder prediction 155 177 - -
Mtr3g3915 225 MobiDBLite consensus disorder prediction 204 225 - -
Mtr3g3915 225 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Mtr3g3915 225 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Mtr3g3915 225 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Mtr3g3915 225 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Mtr3g3915 225 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3915 Mtr-Chr3 52986002 52987309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3915 5 201 AP2-EREBP Transcription Factor Family AT5G25390 61.421 1.67e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr3g3915 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3915 - - lang:109326202 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3915 3 52986002 52987309 Mtr3g3915 3 52986002 52987309 ECH
Mtr3g3915 3 52986002 52987309 Mtr1g0223 1 2521081 2521971 ECH
Mtr4g4133 4 55211659 55213155 Mtr3g3915 3 52986002 52987309 ECH