Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3912 ATGTTGCACTTACTACACGGGAAGCTCGATGTGACTATATATGAGGTCGATACACTACAAACTCTTGCCGGATGCAATTTCGATCTCTGCAACAAGGGAACATGCACAAGCATGGGGAAGAAAATTCTGTCACAAGTCAAGAGTTGTTTTCTGTGTCAATGGCAATGCAAGCCAGAGATTATTGGGATGGGTCTATATGCAACAGTTGATTTAGACAAAGCAAGAGTTGGAAGAACTAGAATGATAGGTAGCCCCAAATGGAACGAAACCTTTCACATTTACTCTGCACATTCAATCTCCAACATTATATTCACTGTCAAACAAGATAACCCCATTGGAGCAACTCTAATTGGAAGAGCTTATGTTCCAGTTGAACAAGTCATAAAGGGCAACATAGTGAATACATGGGTTAATATATTAGATGTAGATCATCATCCAATACAAGGCGGTTCCAAAATTCATGTTCAAATACAATTCTCACATGTTAAAAATGATCCAAACTGGTCACAAGGACTAAAGAGTCCAGGATATCAAGGAGTTCCTCGCACATTCTTTAAACAAAATAATGGTTGCCAAATTACTCTTTACCAAGATGCACATTTTCTAGATGGTTCTGTTCCGTATATTCCATTGGATGGAGCAGAACGGTATGTGCCGGGAAAATGTTGGGAAGATACTTGCAATGCAATTAATGATGCTAAGCATTTTATTTGCATAACTGGTTGGTCTGTTTACACGGAAATAACCTTGATTAGAGATCCAAACGAGTCAACAAGAGCAACCATCACTCTTGGGGAGCTTCTTAAGAAGAAAGCCAATGAAGGTGTTAATGTTCTTATGCTTGTTTGGGATGACAGAACTTCTGTTCCTGACTTTAAGAAAGATGGCTTGATGGCAACTCATGATCAAGAAACAGCAGAGTATTTTAGAAACACAAATGTCCATTGTGTTTTGTGCCCGCGTAACCCTGGTGATGGAAGAAGTATAGTTCAAGGTTTTGAAATTTCAACTATGTTCACTCATCACCAGAAGACTATAATTGTTGACAGCAAAGTCGCTAGTTCTGCACAATGGGAGAAGAGAACAATCACAAGTTTTGTTGGTGGTATTGATCTTTGTGATGGGAGATATGATACCATGGAACATCCTTTGTTTTCAACTCTGAATACAATTCATCATGATGATTTTCATCAACCAAATTTCCCAGGTGCTTCTATTAATAAAGGTGGTCCTAGAGAGCCATGGCATGATATTCATTGTAAACTAGAAGGACCTGTTGCTTGGGATGTGTTGTGCAATTTTGAGCAAAGATGGGAAAAGCAAGTTGGAAAACAATTAATTCCACTACCTTCGAGCATGTTTCGTGAATATGATATTGCTCGTGTATCGAATGTTGCCACGGCAAATCAAAACAATACATGGAATGTTCAGTTGTTTAGATCAATCGATGCTGGTGCTGCTTCTGGCTTCCCTCAAGATCCAACAGAAGCCGCCGAAAAAGGTCTTGTTACTGGAAAAGATAACATCATTGATAGAAGCATTCAAGATGCCTACATAAACGCTATTCGACGAGCTAAGAATTTCATCTACATTGAAAATCAGTATTTTCTAGGTAGTTCATATGGTTGGAAATCGTCTGATATTAAAGTTGAGGATATTGGTGCTTTGCACCTCATACCAAAAGAGTTGTCGCTGAAGATTGTTAGCAAGATTGAAGCTGGAGAGAGATTTTCTGTGTACATTGTCATTCCAATGTGGCCAGAAGGTATACCTGAAAGTGCTTCAGTTCAAGCAATATTAGATTGGCAAAGAAGGACTATGGAGATGATGTATTCTGACATTGCTGAAGCCCTTCAAAGAAAGGGGATCAGAGCCAACCCAAGAGATTACTTGTCATTTTATTGCCTTGGAAACCGAGAGGGTAAGAAAATGAATGAATATACTTCTACAGAAGCACCAGAACCTGACAGTGATTATAGTAGAGCACAAAATTCTAGAAGATTCATGATATATGTTCATGCCAAAATGATGATAGTTGATGATGAATACATAATCATTGGTTCTGCCAACATAAATCAAAGATCAATGGATGGTGCAAGAGACAGTGAGATTGCAATAGGTGCATTTCAACCAAACCATATAGCAACCAATAATAGACCACCAAAAGGACAAATATATGGATTTAGACGTGCACTATGGCATGAGCACCTTGGAGATATTGGTAATACAAGCTTCTATGAAAATCCAGAAAGTTTGGATTGCATTAACCTTGTAAATGGTTTTGCTAAGACCAATTGGGACATATACTCAAAGGATGCATTTGATGAATACAGATCATTTCATCACCTCATGCAGTATCCAATACAAGTAACCAACAATGGAACCATAACAGCTCTTCCAGGATTTGAATGTTTTCCTGATACTAAGGCTAAGATTCTAGGTTCCAAATCTGAGTACCTTCCTCCAATTCTCACCACCTAA 2481 0.3849 MLHLLHGKLDVTIYEVDTLQTLAGCNFDLCNKGTCTSMGKKILSQVKSCFLCQWQCKPEIIGMGLYATVDLDKARVGRTRMIGSPKWNETFHIYSAHSISNIIFTVKQDNPIGATLIGRAYVPVEQVIKGNIVNTWVNILDVDHHPIQGGSKIHVQIQFSHVKNDPNWSQGLKSPGYQGVPRTFFKQNNGCQITLYQDAHFLDGSVPYIPLDGAERYVPGKCWEDTCNAINDAKHFICITGWSVYTEITLIRDPNESTRATITLGELLKKKANEGVNVLMLVWDDRTSVPDFKKDGLMATHDQETAEYFRNTNVHCVLCPRNPGDGRSIVQGFEISTMFTHHQKTIIVDSKVASSAQWEKRTITSFVGGIDLCDGRYDTMEHPLFSTLNTIHHDDFHQPNFPGASINKGGPREPWHDIHCKLEGPVAWDVLCNFEQRWEKQVGKQLIPLPSSMFREYDIARVSNVATANQNNTWNVQLFRSIDAGAASGFPQDPTEAAEKGLVTGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKSSDIKVEDIGALHLIPKELSLKIVSKIEAGERFSVYIVIPMWPEGIPESASVQAILDWQRRTMEMMYSDIAEALQRKGIRANPRDYLSFYCLGNREGKKMNEYTSTEAPEPDSDYSRAQNSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAIGAFQPNHIATNNRPPKGQIYGFRRALWHEHLGDIGNTSFYENPESLDCINLVNGFAKTNWDIYSKDAFDEYRSFHHLMQYPIQVTNNGTITALPGFECFPDTKAKILGSKSEYLPPILTT* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3912 826 CDD C2_plant_PLD 4 159 - -
Mtr3g3912 826 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 668 695 IPR001736 GO:0003824
Mtr3g3912 826 Pfam Phospholipase D Active site motif 337 376 IPR001736 GO:0003824
Mtr3g3912 826 Pfam Phospholipase D Active site motif 669 695 IPR001736 GO:0003824
Mtr3g3912 826 Gene3D Endonuclease Chain A 471 716 - -
Mtr3g3912 826 SMART C2_3c 8 136 IPR000008 -
Mtr3g3912 826 Pfam C2 domain 8 139 IPR000008 -
Mtr3g3912 826 SMART pld_4 668 695 IPR001736 GO:0003824
Mtr3g3912 826 SMART pld_4 337 376 IPR001736 GO:0003824
Mtr3g3912 826 SUPERFAMILY Phospholipase D/nuclease 165 449 - -
Mtr3g3912 826 Pfam Phospholipase D C terminal 746 816 IPR024632 -
Mtr3g3912 826 ProSiteProfiles C2 domain profile. 1 137 IPR000008 -
Mtr3g3912 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 161 IPR035892 -
Mtr3g3912 826 Gene3D Endonuclease Chain A 213 470 - -
Mtr3g3912 826 PANTHER PHOSPHOLIPASE D ALPHA 3 2 826 - -
Mtr3g3912 826 PANTHER PHOSPHOLIPASE D 2 826 IPR015679 -
Mtr3g3912 826 PIRSF PLD_plant 1 826 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Mtr3g3912 826 Gene3D C2 domain 3 163 IPR035892 -
Mtr3g3912 826 SUPERFAMILY Phospholipase D/nuclease 501 736 - -
Mtr3g3912 826 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 337 376 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3912 Mtr-Chr3 52962466 52966257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3912 3 826 Phospholipase D Gene Family (Wang group) AT3G15730 62.291 0.0 1061
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3912 K01115 - gmx:100791688 1313.13