Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3907 ATGATTATAACAAAACATGTTATTATTCTTTCTATGTTCATCTTTATTTTCTTCTTCATGTCAAAACCATGTTTATGTGGTCTTCAATATATTGGTTCAATCTCACCTGGTACGGATGGTTCACAAATGGATTGGATTGACAGAGAAGGAAAATTTCTTCTCTCCAAAACCCAAAATTTCGCTTTAGGTTTCGTCACCACTGCGAACGACACCACCAAGTTTCTATTAGTTATTGTTCATTTAGCTAGCTCCACTGTGATTTGGACTGCTAATAGAGGAAAACCAGTTTCTAATTCTGATAATTTTGTCTTTGATAAAAAGGGTAATGCTTTTTTACAAAAAGATGGAATTTTGATTTGGTCTACCAATACAACCAATAAAGGGGCTTCTTTAATGGTGTTGGAAGATAGTGGGAATTTGGTTTTGCTTGGGAAGGATAATAGTACGGTAATTTGGCAAAGTTTTGATTTTCCTACTGATACTTTGATGCCTCAACAGGTTTTTAAGGAAGGAATGAAGATTACTAGTGAACCTAGTTCAAATAATTTGACCTATGTTCTTGAGATTAAATCTGGTAATGTTGTTCTTTCTGCTGGTTTTAAAATTCCACAGGTTTATTGGACTATGCAGGAGGATAACAGGAAAACCATTGATAAGGATGGTCATGTTGTGGTTTCGGCGAATCTTAGTGACAATTCTTGGAGATTTTATGATGACAAGAAGTCTTTGTTGTGGCAATTCATTTTCTCTGATGATGTAGGTGTAAATGCAACTTGGATTGCTGTTTTGGGAAGGGATGGTGTTATTACTTTCTCTAATCTCAACAGTGGTGGGTCGAATGGTGATTCTTCGACTAGGATACCACAAGATCCTTGTGGGACACCGGAGCCATGCGATCCTTATAGCATATGCACGAACAACCGAAGGTGTAGCTGTCCTTCTATTATTCCTAATTGTAAACCTGGTTTTTTTTCTCCTTGTGATGATAAATCAGAAAACTCTATCCAATTTTTGAAAGGTGATGACGGACTTGGTTACTTTGCACTTGATTTTCTTCAGCCCTTTTCGAAAACCGATTTGGCTGGTTGTCAAACATCGTGCCGGGGAAATTGCTCTTGTCTTGCAATGTTCTTTCATAAAAGTTCCGGAAACTGCTTCCTGTTGGAAAGTGTAGGAAGTTTTAAGAAATCTGATGATGGTGCTGATTCTGGTTATGTTTCTTACATTAAGGTCTCAAGTGATGCAGGCAAAAAAGGAGGTGGAACCAGCAATAAACACATCATTGTTGTTGTTGTTATTGTCATATTAACTTTGTTTGTGATTTCCCTTCTGCTCTTTGTTGGGGTTAGATACTACAGAAAAAAGAAAATGTTACCTGAATCTCCAAAAGAGAATTCAGAAGAGGACAATTTCCTGGAGAATTTAACCGGTATGCCAGTTCGCTACCGCTACAAAGATCTCGAAGTTGCAACTAGTAACTTCTCAACGAAGCTTGGTCAAGGAGGTTTTGGTTCAGTTTATAGAGGAGTTCTACCTGATGGAACTCAATTAGCCGTGAAGCAGCTGGAAGGTATTGGTCAAGGAAAGAAAGAGTTCAGAGCCGAAGTTAGCATCATTGGAAGCATTCATCACCTTAATTTGGTAAGACTTAAAGGATTTTGTGCAGATGGAACACATAGGCTTTTAGTTTATGAGTATATGGCTAATAACTCGTTGGATAAATGGATATTCAAGAAGAAAAAAGGTGATTTTCTTTTGGATTGGGATACAAGGTATAATATAGCAGTAGGAACGGCAAAAGGGCTAGCTTATCTACATGAAGATTGTGATTCAAAGATTGTTCATTGTGACATCAAACCTGAAAATGTGCTTCTAGATGACCATTTCATGGCCAAAGTTTCAGATTTTGGTTTAGCCAAACTCATGAATAGAGAACAAAGTCATGTTTTTACAACAATGCGAGGAACACGTGGATACCTTGCACCTGAATGGATAACAAGCTATGCTATATCAGAGAAAAGTGATGTATACAGCTATGGGATGGTATTGCTAGAGATTATTGGTGGAAGGAAGAACTATGATACTAATGAGAGTTCAGAGAAAAGTTATTTCCCTAGTTTTGCTTTTAAGATGATGGAAGAAGGGAAAGTGAGAGATATACTTGATTCCGAGCTGAAAATTGATGAGCATGATGATAGGGTTCAATGTGCTATAAGGGTTGCATTGTGGTGTATACAAGAAGACATGTCTATGAGACCTTCAATGACCAAAGTTGTTCAAATGTTGGAGGGTCTCTGCACTGTTCCTAAACCACCAACTAGTTCTTACTTGAGTACTCGTCTTTATTCTACTATGTTCAAATCATCTACTAGTGAAGGAGGAACCTCTTCTGGACCATCAGATTGTAATAGTGATGCTTATTTATCAGCAGTTCGTCTTTCTGGCCCAAGATAA 2454 0.3757 MIITKHVIILSMFIFIFFFMSKPCLCGLQYIGSISPGTDGSQMDWIDREGKFLLSKTQNFALGFVTTANDTTKFLLVIVHLASSTVIWTANRGKPVSNSDNFVFDKKGNAFLQKDGILIWSTNTTNKGASLMVLEDSGNLVLLGKDNSTVIWQSFDFPTDTLMPQQVFKEGMKITSEPSSNNLTYVLEIKSGNVVLSAGFKIPQVYWTMQEDNRKTIDKDGHVVVSANLSDNSWRFYDDKKSLLWQFIFSDDVGVNATWIAVLGRDGVITFSNLNSGGSNGDSSTRIPQDPCGTPEPCDPYSICTNNRRCSCPSIIPNCKPGFFSPCDDKSENSIQFLKGDDGLGYFALDFLQPFSKTDLAGCQTSCRGNCSCLAMFFHKSSGNCFLLESVGSFKKSDDGADSGYVSYIKVSSDAGKKGGGTSNKHIIVVVVIVILTLFVISLLLFVGVRYYRKKKMLPESPKENSEEDNFLENLTGMPVRYRYKDLEVATSNFSTKLGQGGFGSVYRGVLPDGTQLAVKQLEGIGQGKKEFRAEVSIIGSIHHLNLVRLKGFCADGTHRLLVYEYMANNSLDKWIFKKKKGDFLLDWDTRYNIAVGTAKGLAYLHEDCDSKIVHCDIKPENVLLDDHFMAKVSDFGLAKLMNREQSHVFTTMRGTRGYLAPEWITSYAISEKSDVYSYGMVLLEIIGGRKNYDTNESSEKSYFPSFAFKMMEEGKVRDILDSELKIDEHDDRVQCAIRVALWCIQEDMSMRPSMTKVVQMLEGLCTVPKPPTSSYLSTRLYSTMFKSSTSEGGTSSGPSDCNSDAYLSAVRLSGPR* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3907 817 ProSiteProfiles Bulb-type lectin domain profile. 38 155 IPR001480 -
Mtr3g3907 817 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Mtr3g3907 817 Pfam Protein kinase domain 495 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3907 817 PIRSF SRK 3 812 IPR024171 GO:0004674
Mtr3g3907 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 84 209 IPR036426 -
Mtr3g3907 817 SMART blect_4 44 158 IPR001480 -
Mtr3g3907 817 CDD STKc_IRAK 498 765 - -
Mtr3g3907 817 SUPERFAMILY Protein kinase-like (PK-like) 473 763 IPR011009 -
Mtr3g3907 817 SMART serkin_6 492 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3907 817 Gene3D - 46 156 IPR036426 -
Mtr3g3907 817 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 11 817 - -
Mtr3g3907 817 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 11 817 - -
Mtr3g3907 817 Gene3D Transferase(Phosphotransferase) domain 1 567 771 - -
Mtr3g3907 817 CDD B_lectin 50 158 IPR001480 -
Mtr3g3907 817 Gene3D Phosphorylase Kinase; domain 1 456 566 - -
Mtr3g3907 817 Pfam D-mannose binding lectin 85 168 IPR001480 -
Mtr3g3907 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Mtr3g3907 817 ProSiteProfiles Protein kinase domain profile. 492 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3907 Mtr-Chr3 52914792 52917743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3907 436 774 Receptor kinase-like Gene Family AT5G20050 46.814 3.48e-99 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Mtr3g3907 Pkinase 1.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3907 - - gmx:100791158 1263.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3907 3 52914792 52917743 Mtr3g3907 3 52914792 52917743 ECH
Mtr3g3907 3 52914792 52917743 Mtr1g0228 1 2568752 2572267 ECH
Mtr1g0228 1 2568752 2572267 Mtr3g3907 3 52914792 52917743 PCT