Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3900 ATGGAACTTCAGTCAGGTCTGGCTCTACCCATTCATAGTTCCATTGAAGGATTCGATCCCTACAACTCTGATTTAAATAATCACATTCGCGGTTCAGAAAATATAAAGTATGTCAAAAACAAACGTAGCTTTGATGAGTCTTTTGGAGATTTTTCGAAACCTTTGCCTCTATTAGTATGGAGTGGACAACCAAATGAAGAAGATGGCCGCAGTGAAAAGAAGAACAGAAGCATTCACACATCAAACAATGAAGGAGAAAACCATTTGGTTGGGTGGCCACCAATTAAATCATGGAGGAAGAAAGAATTTCATGATCAGCAGCTTCCTGAACATATAAGGAAAGCTAATGAAAATCAAAATAGAAGATCAAAACCTTTGTATGTTAAGGTTAACATGGAAGGGGTTGGCATGGGAAGACAAATCAATTTGAGGCTTTACAACTCTTATCAAACTCTCAAAGACTCGTTGATTAGCATGTTTGTTAAATGCCAAAATTTTGAGGAAACTGGAGCAAACTATACACTCACATTTCAGAATAAACAAGGGGAGTGGAAGCTTACAAGCCATATAACATGGCAATCCTTTATTGGTACTGTGCGGCGTTTGGCTATATTGAGGAATGGAGAATGTGAAACTATCTGA 642 0.3785 MELQSGLALPIHSSIEGFDPYNSDLNNHIRGSENIKYVKNKRSFDESFGDFSKPLPLLVWSGQPNEEDGRSEKKNRSIHTSNNEGENHLVGWPPIKSWRKKEFHDQQLPEHIRKANENQNRRSKPLYVKVNMEGVGMGRQINLRLYNSYQTLKDSLISMFVKCQNFEETGANYTLTFQNKQGEWKLTSHITWQSFIGTVRRLAILRNGECETI* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3900 213 MobiDBLite consensus disorder prediction 66 81 - -
Mtr3g3900 213 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 208 IPR003311 GO:0005634|GO:0006355
Mtr3g3900 213 MobiDBLite consensus disorder prediction 59 91 - -
Mtr3g3900 213 ProSiteProfiles PB1 domain profile. 125 212 IPR000270 GO:0005515
Mtr3g3900 213 SUPERFAMILY CAD & PB1 domains 120 203 - -
Mtr3g3900 213 Gene3D - 119 213 - -
Mtr3g3900 213 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 1 208 - -
Mtr3g3900 213 Pfam AUX/IAA family 37 210 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3900 Mtr-Chr3 52834585 52836069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3900 94 213 B3 DNA Binding Superfamily AT3G61830 23.333 1.54e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr3g3900 AUX_IAA 1.4e-23 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3900 K14484 - gmx:100783359 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3900 3 52834585 52836069 Mtr3g3900 3 52834585 52836069 ECH