Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3877 ATGGCGTATCACAACCAAGACAACCCACTCCACCATTTCACAGAACAACAACAACCAACCTCCGATCCTCACCACTCTTTCCAAACTGCACCTAACTGGCTCAACAACGCCCTTCTTCGCAACCTCGACACCAACGTCAACGCCACTGCCACCAACAACAACAACGGTTCCCAATCCTCCGGTCAATGGCTCTCTCGTCCTATCCTCCACCGAAACCATAGCGAAGTCATCGACGACGTCACCGGCGCCGGCATGAAGGCGGAGGAAAGCGGCGAGGCAACGGCGGAGGGAGTGATGAACTGGCAGAAAGCGAAACACAAAGGTGAAATAATGGCGCACCCGTTGTATGAACAGCTTCTATCAGCACACGTGTCGTGTTTAAGAATCGCCACGCCGGTTGACCAGTTGCCCAGGATCGATGCTCAGCTGGCAGAGTCGCAGAATGTTGTTGCCAAGTACTCTGCCTTAGGACAACAGGGCATGCTTGATAACGATGATAATAAACAACTCGACCACTTCATGTCGCACTATGTTTTGTTGCTTTGTTCGTTCAAAGAACAGCTCCAACAACATGTCCGAGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAACAGTCCTTACAAAGTCTAACAGGAGTTTCACCGGGGGAAGGTACAGGAGCAACAATGTCTGAAGATGAAGATGAGCAAGTAGACAGTGATGTTAATCTGTTTGATGGAGGTTTGGATGGTTCAGATAATAGCATGGGAGGATTTGGTCCTCTTGTTCTAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCATGAGTTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGAAAACTTCCTGGTGACACAACCTCAGTACTTAAAGATTGGTGGCAATCACATTCAAAGTGGCCTTATCCTACTGAAGAGGATAAGGCAAGGTTGGTGCAAGAAACCGGGTTGCAATTGAAACAGATCAATAACTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACTTCTAATGCATTGAAGAGCAAGCGCAAGAGTAATGCAGGTGATAAAAGTACCAAGCTCGAGAACCAAAACCTTATATCATGGTGGCAGCAGATCCAACAAAGTAAATGA 1191 0.4677 MAYHNQDNPLHHFTEQQQPTSDPHHSFQTAPNWLNNALLRNLDTNVNATATNNNNGSQSSGQWLSRPILHRNHSEVIDDVTGAGMKAEESGEATAEGVMNWQKAKHKGEIMAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLAESQNVVAKYSALGQQGMLDNDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDEQVDSDVNLFDGGLDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKDWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNALKSKRKSNAGDKSTKLENQNLISWWQQIQQSK* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3877 396 SMART HOX_1 296 361 IPR001356 GO:0003677
Mtr3g3877 396 MobiDBLite consensus disorder prediction 351 368 - -
Mtr3g3877 396 SMART KNOX1_2 104 148 IPR005540 GO:0003677|GO:0005634
Mtr3g3877 396 CDD homeodomain 297 358 IPR001356 GO:0003677
Mtr3g3877 396 MobiDBLite consensus disorder prediction 214 233 - -
Mtr3g3877 396 Pfam KNOX1 domain 107 147 IPR005540 GO:0003677|GO:0005634
Mtr3g3877 396 Gene3D - 295 356 - -
Mtr3g3877 396 ProSiteProfiles ELK domain profile. 274 294 IPR005539 GO:0003677
Mtr3g3877 396 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 20 371 - -
Mtr3g3877 396 SMART KNOX2_2 160 215 IPR005541 GO:0003677|GO:0005634
Mtr3g3877 396 Pfam Homeobox KN domain 314 353 IPR008422 GO:0003677|GO:0006355
Mtr3g3877 396 SMART ELK_2 274 295 IPR005539 GO:0003677
Mtr3g3877 396 Pfam KNOX2 domain 166 214 IPR005541 GO:0003677|GO:0005634
Mtr3g3877 396 MobiDBLite consensus disorder prediction 351 379 - -
Mtr3g3877 396 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 20 371 - -
Mtr3g3877 396 ProSiteProfiles 'Homeobox' domain profile. 294 357 IPR001356 GO:0003677
Mtr3g3877 396 Pfam ELK domain 274 295 IPR005539 GO:0003677
Mtr3g3877 396 SUPERFAMILY Homeodomain-like 296 360 IPR009057 -
Mtr3g3877 396 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3877 Mtr-Chr3 52623575 52627969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3877 1 370 Homeobox Transcription Factor Family AT5G25220 65.412 3.22e-180 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mtr3g3877 KNOX2 5.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3877 - - gmx:100790048 563.533