Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3874 ATGAAGCTTGTTGTTCTTCTCATGCTTCTCATGGTGCTTCTTCTTATTCTTATTTTGAGTTTCATATGTTTATGGATTTACTACAACAACTATTCATCAAAATCCAAAAGGAAAAATAATGTTCAAAACTCAGAAAAGGGGTGTGTTCCAATAATTGATTACAAGCAAATAGAAAAATCGACCGACAATTTTCAGGAAAGTAACATCTTGGGTGTAGGTGGTTTTGGATGTGTTTACAAGGCACAATTTGATGATAATTTGGATGTTGCTGTCAAGAAACTACACTGCCAAACACAAAATGCTGAGACAGAATTTGAGAATGAGGTGGATTTATTGAGTAAAATTCAGCATCCAAATATAATTTCTTTGCTCGGTTGTAGCATTAATGGAGACATGAGATTTATTGTGTATGAGTTAATGCAAAATGGATCCTTGGAAGCTCTATTACATGGACCATCTCATGGCTCAGGATTGACTTGGCATATGAGAATGAAGATTGCTCTTGACACAGCAAGAGGATTAGAATATCTACATGAGCATTGTTACCCTCGAGTGATTCATAGAGATATGAAATCTTCAAATATTCTTTTAGATGCAAACTTCAATGCCAAGCTCTCTGATTTTGGTCTGTCCATAATTGATGGGTCCCAAAAGAAGAACATCAAGGTTTCAGGAACATTGGGATACGTAGCCCCAGAATATCTTTTAGATGATAAATTGACTGATAAAAGTGATGTGTATGCCTATGGGGTTGTACTCCTGGAGCTCCTGTTTGGAAGGAAACCTGTAGAAAAACTGGCACCAGCTCAGTGTCAATCCCTTGTCACATGGGCCATGCCTCAGCTCACAGACAGGTCCAAACTTCCAAACATTGTGGATCCAGTCATAAAGAATACAATGGATCTCAAGCACTTATACCAGGTTGCTGCGGTAGCTGTGCTATGTGTGCAACCAGAGCCAAGTTACCGGCCACTAATCACAGATGTTCTTCACTCCCTCGTCCCTCTTGTTCCAGTTGAGCTTGGAGGAACACTTAGAGTGACACAATATTCAACCGATCCATCTAAGAGTTTGAGCCAGAGATAG 1086 0.3932 MKLVVLLMLLMVLLLILILSFICLWIYYNNYSSKSKRKNNVQNSEKGCVPIIDYKQIEKSTDNFQESNILGVGGFGCVYKAQFDDNLDVAVKKLHCQTQNAETEFENEVDLLSKIQHPNIISLLGCSINGDMRFIVYELMQNGSLEALLHGPSHGSGLTWHMRMKIALDTARGLEYLHEHCYPRVIHRDMKSSNILLDANFNAKLSDFGLSIIDGSQKKNIKVSGTLGYVAPEYLLDDKLTDKSDVYAYGVVLLELLFGRKPVEKLAPAQCQSLVTWAMPQLTDRSKLPNIVDPVIKNTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLVPLVPVELGGTLRVTQYSTDPSKSLSQR* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3874 361 Gene3D Transferase(Phosphotransferase) domain 1 140 338 - -
Mtr3g3874 361 CDD STKc_IRAK 70 336 - -
Mtr3g3874 361 Gene3D Phosphorylase Kinase; domain 1 27 139 - -
Mtr3g3874 361 SUPERFAMILY Protein kinase-like (PK-like) 39 333 IPR011009 -
Mtr3g3874 361 PANTHER OS01G0750732 PROTEIN 2 354 - -
Mtr3g3874 361 ProSiteProfiles Protein kinase domain profile. 64 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3874 361 Pfam Protein kinase domain 64 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3874 361 SMART serkin_6 64 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3874 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Mtr3g3874 361 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524
Mtr3g3874 361 PANTHER BNAA04G14780D PROTEIN 2 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3874 Mtr-Chr3 52573529 52578526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3874 4 337 Receptor kinase-like Gene Family AT3G58690 45.763 1.35e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Mtr3g3874 Pkinase 9.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3874 - - gmx:100784795 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0255 1 2845784 2850312 Mtr3g3874 3 52573529 52578526 PCT