Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3872 ATGGCTAGACCACAACAACGTTACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTAAAAACTAGAATATGGCTTGGTACTTTTGAAACTGCAGAGGATGCAGCTAGAGCATACGATGAAGCAGCAAGATTAATGTGTGGAACAAGGGCAAGAACAAATTTCCCTTACAACCCCAATGTGTCACAATCATCATCTTCTAAGCTTCTCTCAGCAACTTTAACTGCTAAACTGCATAGATGCTACATGGCTTCATTGCAAATCACTAGGCCAATATCTCTGCAACAGCCTCAGAAACAATCTTCACAAAGTGTCAACATATCTACAAACAATGCTCCCATGAAAAGTAGCCAAGAAATTGATACTACTATGAAACATGAAGAGGAAAAAGAATCAGAGGGAAATTGGGTTTTCAAGAAAGTTAAAGTGGAAAATTCTCAGCAATTTATTAAGCCTCTTGAAGAAGATCACATTGAACAAATGATAGAGGAATTGCTTCATTATGGGTCTATTGAGCTTTGTTCTGTTTTTCCAACACAGACATGA 570 0.3982 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNVSQSSSSKLLSATLTAKLHRCYMASLQITRPISLQQPQKQSSQSVNISTNNAPMKSSQEIDTTMKHEEEKESEGNWVFKKVKVENSQQFIKPLEEDHIEQMIEELLHYGSIELCSVFPTQT* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3872 189 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Mtr3g3872 189 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Mtr3g3872 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 184 - -
Mtr3g3872 189 MobiDBLite consensus disorder prediction 102 139 - -
Mtr3g3872 189 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 184 - -
Mtr3g3872 189 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Mtr3g3872 189 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Mtr3g3872 189 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Mtr3g3872 189 MobiDBLite consensus disorder prediction 102 127 - -
Mtr3g3872 189 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Mtr3g3872 189 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Mtr3g3872 189 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3872 Mtr-Chr3 52556005 52557166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3872 1 189 AP2-EREBP Transcription Factor Family AT5G25190 66.839 4.49e-85 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr3g3872 AP2 6.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3872 - - gmx:100804510 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3872 3 52556005 52557166 Mtr3g3872 3 52556005 52557166 ECH