Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3869 ATGGAAATGCCATTGCAGAATCCACATGAAACTTTTGAGGAAGAAGAAAAGGAGGCAAAGGTAGATACTTCATTTGATCTGAATGTTCCTAACAATGATTGTGATCTTGGGTGCAATTCAATGTCAAATTTAGTTACATGTTTGGACATAGATAATTCTTCTAAAACATCCTCAGAAAATTTCACTTGTGGCTCTGAATCAACTTCAGAGCCACGTTTTTTCACTTGCAACTACTGCAAGAGAAAATTCTTCAGTTCACAAGCACTTGGGGGACATCAAAATGCTCACAAGAGAGAGAGGTCAATTGCAAAAAGAGGACGGAGGACGATGTTCTCAGCAACAGGAACAACCTCATTTCTTCATAATCATCTTCACCACCGTTATGCAAATATGGCATCTCTACTACCACTCTATGGTGCTAACAGTAATAGTATGAGACCACTTTCAATCAAGGTGCACTCTATTGTTCAAAAGCCAATTCATAATTTTTCATCCAATGGCTTTGGAACTGAAAGCACTTATTATGGATATCATGGTTGGTCAAGACCCCTTATGAATCAACAACCTGGAAGAGGAAAGCTGCTGATGCAAACTTTGCAGGAAACAGGATTATTATCACAAAGTAGTGTTGGTAGATTCGAAGAGGTTAAAAAGGACATGGTCAATTCAGGAACTGGTTTGAACTAG 687 0.3857 MEMPLQNPHETFEEEEKEAKVDTSFDLNVPNNDCDLGCNSMSNLVTCLDIDNSSKTSSENFTCGSESTSEPRFFTCNYCKRKFFSSQALGGHQNAHKRERSIAKRGRRTMFSATGTTSFLHNHLHHRYANMASLLPLYGANSNSMRPLSIKVHSIVQKPIHNFSSNGFGTESTYYGYHGWSRPLMNQQPGRGKLLMQTLQETGLLSQSSVGRFEEVKKDMVNSGTGLN* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3869 228 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 223 IPR044246 GO:0009788
Mtr3g3869 228 MobiDBLite consensus disorder prediction 7 22 - -
Mtr3g3869 228 Gene3D Classic Zinc Finger 50 126 - -
Mtr3g3869 228 MobiDBLite consensus disorder prediction 1 22 - -
Mtr3g3869 228 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 101 IPR013087 -
Mtr3g3869 228 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Mtr3g3869 228 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 223 - -
Mtr3g3869 228 SUPERFAMILY beta-beta-alpha zinc fingers 71 101 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3869 Mtr-Chr3 52517911 52519063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3869 43 194 C2H2 Transcription Factor Family AT5G25160 44.444 3.35e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr3g3869 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3869 - - mtr:MTR_3g106230 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0262 1 2906712 2907888 Mtr3g3869 3 52517911 52519063 PCT