Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3868 ATGGTTGATTCCGGTGACCGTTTTCCTATCGGAATGCGTGTTCTCGCCGTTGACGACGATCCAACTTGTCTCTTGGTTTTGGAAACTCTTCTCCGAAGATGTCAATACCACGTAACCACAACTAGTCAAGCAATAACGGCGTTGACCATGTTGAGAGAAAACAAAGACAAGTTTGACCTGGTAATCAGTGATGTACACATGCCGGACATGGATGGATTTAAGCTGCTTGAACTTGTGGGACTTGAAATGGACCTTCCCGTCATAATGTTGTCTGCATATGGTGATACAAAGCTGGTGATGAAAGGAATTTCCCATGGTGCCTGTGATTATCTGCTGAAACCTGTGAGATTAGAGGAGCTAAAGAACATTTGGCAGCATGTAATTAGGAAGAAGAAGTCTGATCCAAAGGAGAAAAACAAAACCAGTAAACCAGACAAAACTACTTCTGACAGTGGCAGTGGACTAAGATCTGCAGGAGCAGAAAATTCAGATGAAAATGGAAAGCTGACTAAGAAAAGAAAGGATCAGGATGAAGACGAAGACGAGGATAAAGAGAATGGTAATGACAATGAGGACCCATCAGCTCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAGGCTGTACCCAAAAAAATTCTTGATATGATGAATGTCGAAAATATTACAAGGGAGAACGTGGCAAGCCATCTCCAGAAGTATAGACTTTATCTGAAAAGAATTAGCTGTGTTGCAAACCAACAAGCTAGTATGGTGGCAGCCTTAGGGAGTGCAGATCAATCTTATTTGAGAATGGGTGGTTCTGGACATTTTCACAATAATGCTTTCAGATCCTTTTCACCTAGTGGGATAATTGGTAATCTGAACACTCCAACTAGTCTTAACGGGCATGGATTTTCTCCTTCGGGACTACTTCAGTTGGGCCAATCACGTAATTTAAACAATTCTTGCAATGATCAACTTAAATTCCAGTCAGCCATAACTCCCGTTAATCAGAATATTCTTCAGGGAATGCCAATGTCCATAGGGTTTGATCACTTGCAAAACAGCAAGGGTGTTATCTCTGTTCAAAACCTGAATACTGATGTGAAAACAACTTTTCCCATTCCAAATAAATTCCCGGATCAAAGGCCAAGTTTTGCCACCTCTAGTTCTCATCCCCCAAGTCTCGGTATCTCAAACAATGGCTTGATGTTGGATACACACCCTGAAAGAAAACACGGTGGTATAGGAATAGGATATGGAAGTTCATCTTCTTCAGTAGCCTCTCAACATTCAGAATTTTCTTTCTCTATGCTGGATCAAGGTAGGCACGGTGGTAATTGGTCAAGCGACGTGCCAATATCTGGAATCCAAACAAATTCTTTCTCTTCAAGTGAATGTTTTAGACAGACAGCTGTTCCTCCTTCAGATAACATGGCTTCTTTGCCCTTGCAAGCAGGGTATTCTGGTGGTTCGTTGCCAGATATGCACTCCCAAGGAATGATTTTTACTAATTCACCTGAGTATATAAACGGTAATTTGCCATTTCAAGGATGGGAAGACCGTAATCAGGATGCTACTTACCACTCAAATGTTACTTGTGGGTCAATGAACTCTCTTGCTCCAGTTAACGGTGCCGTTGTTCCACCAGGCCAGACAGCAACTGAATCCACCTTGGATACTAAATTTTTTAATCCCATACAAATGAAGCATGCTGGATTTGCTGAGTTAACTGAATGCAGCTCATCAAGACAATCTCCAGCTAATATCATAAGCCAGCAGAAGTTTTCTAATAATCTTGGTTCGCTGGAATACTTGGCGAGTTCAATGATGGGACAGGAGCAAGATAAGATGAAATTGTTGGGTGGAGACTTCATATGCGATAATTACTCCGACGGGGTATCTTTGTGA 1938 0.4205 MVDSGDRFPIGMRVLAVDDDPTCLLVLETLLRRCQYHVTTTSQAITALTMLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELKNIWQHVIRKKKSDPKEKNKTSKPDKTTSDSGSGLRSAGAENSDENGKLTKKRKDQDEDEDEDKENGNDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDMMNVENITRENVASHLQKYRLYLKRISCVANQQASMVAALGSADQSYLRMGGSGHFHNNAFRSFSPSGIIGNLNTPTSLNGHGFSPSGLLQLGQSRNLNNSCNDQLKFQSAITPVNQNILQGMPMSIGFDHLQNSKGVISVQNLNTDVKTTFPIPNKFPDQRPSFATSSSHPPSLGISNNGLMLDTHPERKHGGIGIGYGSSSSSVASQHSEFSFSMLDQGRHGGNWSSDVPISGIQTNSFSSSECFRQTAVPPSDNMASLPLQAGYSGGSLPDMHSQGMIFTNSPEYINGNLPFQGWEDRNQDATYHSNVTCGSMNSLAPVNGAVVPPGQTATESTLDTKFFNPIQMKHAGFAELTECSSSRQSPANIISQQKFSNNLGSLEYLASSMMGQEQDKMKLLGGDFICDNYSDGVSL* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3868 645 Pfam Response regulator receiver domain 14 122 IPR001789 GO:0000160
Mtr3g3868 645 Gene3D - 194 257 - -
Mtr3g3868 645 MobiDBLite consensus disorder prediction 165 179 - -
Mtr3g3868 645 PIRSF RR_ARR_type-B 2 643 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mtr3g3868 645 MobiDBLite consensus disorder prediction 130 145 - -
Mtr3g3868 645 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 620 IPR045279 GO:0009736
Mtr3g3868 645 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Mtr3g3868 645 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Mtr3g3868 645 MobiDBLite consensus disorder prediction 146 164 - -
Mtr3g3868 645 MobiDBLite consensus disorder prediction 130 200 - -
Mtr3g3868 645 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Mtr3g3868 645 SUPERFAMILY CheY-like 11 132 IPR011006 -
Mtr3g3868 645 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 6 620 - -
Mtr3g3868 645 SMART REC_2 12 124 IPR001789 GO:0000160
Mtr3g3868 645 CDD REC_typeB_ARR-like 14 128 - -
Mtr3g3868 645 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Mtr3g3868 645 MobiDBLite consensus disorder prediction 383 404 - -
Mtr3g3868 645 Gene3D - 11 148 - -
Mtr3g3868 645 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3868 Mtr-Chr3 52511147 52515705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3868 2 419 Response Regulator Gene Family AT2G25180 52.500 1.01e-129 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr3g3868 Response_reg 1.4e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3868 - K14491 gmx:100809002 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0266 1 2942692 2947214 Mtr3g3868 3 52511147 52515705 PCT