Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3867 ATGAGTAGCTTGGTTGAAAGGCTTCGCGTACGATCGGATCGCAAGCCAGTTTATAATCTTGATGAGTCAGATGATGAAGATTTTTTGCTTAAAAAACCCGGGGCAAGTCAGGAAAAGTTTGAGAGGATTGATAGAAGTGATGCGAAAGAGGATTTATGTCAAGCATGTGGTGAAAGTGGAGATCTCCTGAGTTGTGCAACTTGCAACTATGCTTACCATTCTAGTTGTTTACTTCCACCACTTAAAGGTCCTGCTCCTGACAACTGGAGGTGCCCTGAATGCGTTACCCCCCTTATTGATATTGATAAGTTATTAGACTGTGAGATGCGCCCTACTGTAGAGGGTGATGGTGACGCTGACAGTGACGCTGCAAAGTCTGGGTCAAAGCAAATTTTTGTTAAACAATATCTTGTTAAGTGGAAGGGACTATCATATCTGCACTGTGCTTGGGTGCCAGAGAAAGAGTTTCTGAAAGCTTTCAAGAGTCATCCTCGCCTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGGCATCCTCCAATACGTCAGATGAAGACTTTGTTGCAATTCGTCCTGAATGGACCACAGTTGATCGAATAATTGCTTGCAGGGGTGATAACGATGAGAGGGAATATCTGGTGAAGTGGAAAGAGCTTCCATATGATGAATGTTATTGGGAATCTGAGTCTGATATTTCTGCATTTCAGCCGGAAATAGAAAGATTTAATAGATTTCGTTCTAGATCGAGCAAACTTGCTTCCATCAAGCAACAAAGCCGTGTTAATGATGACAATGAATTGAAGAAACAGCAGAAAGAATTTCATCAGTATGAACATAGCCCTGAGTTTCTTTCAGGTTCTCTACACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAAACACATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACTATACAAAGTATTGCTTTCTTAGCATCCCTTTTTGAAGAGGGTGTCTCTGCACATCCACATCTGGTGGTTGCTCCACTTTCAACACTGCGAAACTGGGAACGTGAATTTGCAACATGGGCCCCTCAAATGAATGTTATTATGTATGTTGGATCTGCCCAAGCTCGTAGTGTTATCAGAGAATATGAATTTTACTTTCCCAAGAAACTGAAGAAGAACAAGAAAAAGAAATCTTTAGTTAGTGAAAGTAAGCATGACAGGATTAAGTTTGATGTCCTTTTGACATCATATGAGATGATCAACTTAGACACAACATCATTAAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGCCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTACCAGACATCGTGTGCTCTTGACTGGAACTCCTCTTCAGAACAACTTGGATGAACTTTTTATGCTTATGCATTTCCTTGATGCGGGGAAGTTTGCAAGTTTAGAGGAATTCCAAGAAGAATTCAAGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGCTGGCCCCGCATCTTCTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTACGAGTGGATTTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACCCGCCGTGGTGGTGCACAGATTTCTCTTATCAACGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATGCTTACATGTTAGAAGGAGTTGAGCCAGATATTGACGATCCAAAAGAAGCATTCAAGCAATTGCTGGAATCATCAGGGAAGTTGCACTTGCTGGACAAGATGATGGTGAAGCTTAAAGAACAAGGACATAGAGTTCTCATATACTCCCAGTTTCAGCACATGCTTGATTTGCTTGAAGATTACTGCTCTTACAAGAAATGGCATTATGAAAGGATAGATGGCAAGGTTGGTGGGGCTGAAAGACAAATACGGATAGATCGTTTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACAAGAGCCGGGGGTTTGGGAATAAACCTTGCAACTGCTGACACAGTTGTTATTTATGACAGTGATTGGAATCCTCATGCTGACCTACAAGCAATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGGGGAACGATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACACCTTGTTGTAGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATACGATATGGCTCAAAGGAGTTATTTGCAGATGAGAATGATGAAGCAGGAAAATCCCGTCAAATCCATTATGATGCAGCTGCTATCGACAGGTTGCTGGATCGTGACCAAGTTGTAGATGAAGAAACTACTTTGGATGATGAAGATGAAGATGGATTTCTGAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAGGCTGCTGCAGAGGAGGCAGCACAAAAAAGAGCAATGGAAACCGCTAACAGTTCAGATAGAACACATTATTGGGAAGAGCTGTTAAAAGACAAGTTTCAGGAGCATAAAGTTGAGGAATTTAATGCTTTGGGAAAAGGGAAGAGAAACCGCAAATTGATGGTTTCTGTTGAGGAGGACGACCTTGCTGGTCTTGAAGATGTAAGCTCTGACGAAGACGACAATTATGAAGCAGAGCTTACTGACGGTGATTCAAATTCCACTGGAACTACTACTACTAGAAGGCCGTATAAGAAAAAAGCACGTACAGCGGATAGCACAGAGCCGCTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTACTTGGTTTTAATCAAAGTCAGAGGGCTGCCTTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAAGAGTTTACTTCGCGCATGAAACAGAAGACTTACGAAGAAATCAAAGACTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGACATAACCGATTCCTCTACATTCACAGACGGTGTTCCAAAAGAAGGACTCCGAATCCAAGATGTGCTTGTTAGGATTGCAGTCCTGCTCTTGATAAGGGACAAAGTGAGGTTTGCATCAGAACATCCTCAAACTCCACTGTTTTCAGATGACATCTTATTACGCTATCCAGGTTTGAAGGGTATAAGGAAGTGGAAGGAGGAGCATGATTTTATGCTACTACGTGCTGTGTTAAAGCACGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAGGGATCTGAAGATTCAGGAGATCATCTGTCAGGAGTTGAATCTTCCCGTTATAAATTTACCAGGACCAGGACAAGTTGGCTCTCACGTACAAAATGGTGCAAATGTTGCAAATGCAGAAATACCCAGCAATGAATCCAGGGAAAATGGTGGAAGTGGCATAGCAGCCGATGGTGCACAAGGTTCTGGTGATGCTAAGAACCAAACACAGCTATATCAAGACTCGTCCTTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTGTAAAAAAGAGGGTTCTTCTTTTGGAAAAGGGGCTAAATGCCGAGTACCAGAAAGAATATTTTGGTGATCCAAAAGCTGGTGAAGTAACCAATGAAGAACTTAAAAGTGAACCCAAGTCTACCACTATTCCAAGTTTTATATCAGTAGATACTGACACCCAAATGATTGATCAATTGCCACAAGTAGAAATAATAGCTCCAGAAGATGTTTCGGTTGTTTGTGATAGTGATTCAAATCGACTGGAATTAGTTCGACTTTACAATGAGATGTGCAAAGTAGTTGAGGAAAACCCTATGGATTTAGTTCAATCGTCATCGGCAAGAGAACCGGCAGAGGTCAATGCGGTGAAGAAGTGCCCGCCACTAGAAACCATCTGTGAAGATATCAACAGAATTCTAACACCCACAGCAGAACAACCTGTTGCAGAAACTCCAGTATTAAATTCAGATAACAAATCGGAGGAAATATCACACATTGAAGTTTTGGGGTCCAAATCACCGCCTAACCCTCAAAATGACCTTAAACGTGATTCTTTAGCAAACGACGATGCAAAAGATATGGTAGTAGACTCTGCGGAGAAAAAGGAAAGTAATACAGCAATGGATGAAAGTAGCAATGCTGAGTTGAATGAGGACACATAA 4239 0.4093 MSSLVERLRVRSDRKPVYNLDESDDEDFLLKKPGASQEKFERIDRSDAKEDLCQACGESGDLLSCATCNYAYHSSCLLPPLKGPAPDNWRCPECVTPLIDIDKLLDCEMRPTVEGDGDADSDAAKSGSKQIFVKQYLVKWKGLSYLHCAWVPEKEFLKAFKSHPRLKTKVNNFHRQMASSNTSDEDFVAIRPEWTTVDRIIACRGDNDEREYLVKWKELPYDECYWESESDISAFQPEIERFNRFRSRSSKLASIKQQSRVNDDNELKKQQKEFHQYEHSPEFLSGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVSAHPHLVVAPLSTLRNWEREFATWAPQMNVIMYVGSAQARSVIREYEFYFPKKLKKNKKKKSLVSESKHDRIKFDVLLTSYEMINLDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFASLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVDLSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHAYMLEGVEPDIDDPKEAFKQLLESSGKLHLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKKWHYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVVDEETTLDDEDEDGFLKAFKVANFEYVDEAEAAAEEAAQKRAMETANSSDRTHYWEELLKDKFQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDEDDNYEAELTDGDSNSTGTTTTRRPYKKKARTADSTEPLPLMEGEGKAFRVLGFNQSQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSSTFTDGVPKEGLRIQDVLVRIAVLLLIRDKVRFASEHPQTPLFSDDILLRYPGLKGIRKWKEEHDFMLLRAVLKHGYGRWQAIVDDRDLKIQEIICQELNLPVINLPGPGQVGSHVQNGANVANAEIPSNESRENGGSGIAADGAQGSGDAKNQTQLYQDSSLYHFRDMQRRQVEFVKKRVLLLEKGLNAEYQKEYFGDPKAGEVTNEELKSEPKSTTIPSFISVDTDTQMIDQLPQVEIIAPEDVSVVCDSDSNRLELVRLYNEMCKVVEENPMDLVQSSSAREPAEVNAVKKCPPLETICEDINRILTPTAEQPVAETPVLNSDNKSEEISHIEVLGSKSPPNPQNDLKRDSLANDDAKDMVVDSAEKKESNTAMDESSNAELNEDT* 1413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3867 1412 MobiDBLite consensus disorder prediction 906 923 - -
Mtr3g3867 1412 CDD CD1_tandem 101 175 - -
Mtr3g3867 1412 SMART DUF1086_2 913 1071 IPR009462 GO:0003677|GO:0006338
Mtr3g3867 1412 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 614 775 IPR001650 -
Mtr3g3867 1412 Pfam Helicase conserved C-terminal domain 612 724 IPR001650 -
Mtr3g3867 1412 Pfam SNF2-related domain 308 587 IPR000330 GO:0005524|GO:0140658
Mtr3g3867 1412 MobiDBLite consensus disorder prediction 1375 1400 - -
Mtr3g3867 1412 Pfam CHD subfamily II, SANT-like domain 934 1068 IPR009462 GO:0003677|GO:0006338
Mtr3g3867 1412 SMART PHD_3 52 95 IPR001965 -
Mtr3g3867 1412 Pfam Chromo (CHRromatin Organisation MOdifier) domain 124 160 IPR023780 -
Mtr3g3867 1412 Pfam Chromo (CHRromatin Organisation MOdifier) domain 196 244 IPR023780 -
Mtr3g3867 1412 SUPERFAMILY Chromo domain-like 182 246 IPR016197 -
Mtr3g3867 1412 Pfam PHD-finger 53 95 IPR019787 -
Mtr3g3867 1412 Gene3D - 1038 1213 - -
Mtr3g3867 1412 Gene3D - 531 755 IPR027417 -
Mtr3g3867 1412 SUPERFAMILY Chromo domain-like 65 179 IPR016197 -
Mtr3g3867 1412 ProSiteProfiles Chromo and chromo shadow domain profile. 195 244 IPR000953 -
Mtr3g3867 1412 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1056 - -
Mtr3g3867 1412 Coils Coil 840 860 - -
Mtr3g3867 1412 SMART helicmild6 640 724 IPR001650 -
Mtr3g3867 1412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 779 IPR027417 -
Mtr3g3867 1412 ProSitePatterns Zinc finger PHD-type signature. 53 94 IPR019786 -
Mtr3g3867 1412 Gene3D - 99 191 - -
Mtr3g3867 1412 Gene3D - 285 530 IPR038718 -
Mtr3g3867 1412 CDD SF2_C_SNF 609 735 - -
Mtr3g3867 1412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 521 IPR027417 -
Mtr3g3867 1412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 98 IPR013083 -
Mtr3g3867 1412 MobiDBLite consensus disorder prediction 1151 1175 - -
Mtr3g3867 1412 MobiDBLite consensus disorder prediction 906 955 - -
Mtr3g3867 1412 CDD CD2_tandem 193 244 - -
Mtr3g3867 1412 SMART ultradead3 284 497 IPR014001 -
Mtr3g3867 1412 Gene3D - 192 244 - -
Mtr3g3867 1412 SMART DUF1087_2 841 907 IPR009463 -
Mtr3g3867 1412 ProSiteProfiles Chromo and chromo shadow domain profile. 99 185 IPR000953 -
Mtr3g3867 1412 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 300 486 IPR014001 -
Mtr3g3867 1412 SMART chromo_7 193 247 IPR000953 -
Mtr3g3867 1412 SMART chromo_7 98 171 IPR000953 -
Mtr3g3867 1412 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1056 - -
Mtr3g3867 1412 MobiDBLite consensus disorder prediction 1339 1412 - -
Mtr3g3867 1412 ProSiteProfiles Zinc finger PHD-type profile. 50 97 IPR019787 -
Mtr3g3867 1412 Pfam CHD subfamily II, DUF1087 846 904 IPR009463 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3867 Mtr-Chr3 52486820 52505938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3867 603 775 RAD5 or RAD16-like Gene Family AT5G22750 32.948 9.49e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr3g3867 SNF2_N 1e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3867 K11643 - gmx:100804203 2366.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0267 1 2950219 2966116 Mtr3g3867 3 52486820 52505938 PCT