Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3864 ATGGCTAAGTGTCACCGGAGTAACGTTGATTCAATTGTTCTCCATCACCGCCACCATGCCAAAAACACCACCGCCGGTAATTTCCGCTTCTCCGCCTCTTCATTCCGCCGCATTATTTTCGACGCCTTAAGCTGCGGCGGAGCCTCTCGACACCACCGACATTACCACCGCGAAGAAGAAATTAGCTCTGTCGCGTCGACGGCAACCGTGAAGGAGTTACGCGGAGAAGTGCAAGAAGAAAAGACGGAGAAGCTATTGGATCTTCTGAACATACAGGTGCATGAAACAAATGCGGAATCGAAGAAGAAAGAAGAGACATTAACGGAGATGAAGCATGTGGTTAAGGATTTACGCGGAGAAGACTCGACAAAGCGGCGAATAGCGGCAGCGAGAGTAAGATCACTGACGAAAGAAGATTCCGAAGCGAGAGGCTCACTCGCAATGCTCGGGGCTATTTCTCCTCTCGTTGGAATGCTTGATTCAGAAGATCTTCATTCTCAGATTGATTCTCTGTATGCTTTACTCAATCTCGGAATCGCCAACGATGCAAATAAAGCAGCGATTGTTAAAATTGGTGCTGTTCATAAGATGCTGAAGCTGATTGAATCACCTTGTGTTGTTGATTCATCGGTTTCTGAGGCAATTGTTGCAAATTTCCTTGGATTAAGTGCTTTGGATTCTAATAAACCAATAATTGGATCTTCTGGTGCAATACCCTTCCTAGTTAGGATCCTGAAAAATTTAGATAATAGTAGTAAAAGTAGCTCTCAAGTTAAACAAGATGCTCTTCGGGCTCTTTACAATCTATCGATCAATCAGACGAATATTTCATTTGTTTTGGAAACTGATTTGGTCGTGTTTTTGATAAACTCGATAGAAGATATGGAAGTGAGTGAGAGAGTCCTTTCAATTCTGAGCAATTTGGTGTCGAGTCCTGAGGGTAGAAAAGCTATAAGTGCTGTTAAGGATGCAATCACAGTTTTGGTCGATGTATTGAATTGGACAGATTCACCTGAATGTCAAGAGAAGGCTTCATACATTTTGATGATTATGGCACATAAAGCCTATGCTGATAGACAAGCCATGATTGAGGCAGGGATTGTATCGTCATTGCTTGAGTTGACGCTTGTGGGTACAGCCTTGGCGCAGAAAAGGGCATCCAGAATACTGCAATGTTTCAGGCTAGATAAAGGGAAGCAGGTTTCTAGGAGCTGTGATGGTGGAAACTTAGGTTTAACTGTCTCTGCGCCTATTTGTGCTTCTTCGTCTTCTCTTGTGAAGACAGATGGAGGAGGTAAAGAGTGTTTAATGGAGGAGGTGAATATGATGAGTGATGAAAAGAAAGCAGTGAAGCAATTAGTTCAGCAGAGCTTGCAGAACAACATGATGAAAATTGTCAAGAGGGCTAACTTGCGTCAAGATTTTGTTCCTTCTGAGCGTTTTGCTTCACTCACTTCAAGTTCAACATCTAAGAGCCTTCCGTTTTGA 1488 0.4321 MAKCHRSNVDSIVLHHRHHAKNTTAGNFRFSASSFRRIIFDALSCGGASRHHRHYHREEEISSVASTATVKELRGEVQEEKTEKLLDLLNIQVHETNAESKKKEETLTEMKHVVKDLRGEDSTKRRIAAARVRSLTKEDSEARGSLAMLGAISPLVGMLDSEDLHSQIDSLYALLNLGIANDANKAAIVKIGAVHKMLKLIESPCVVDSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRILKNLDNSSKSSSQVKQDALRALYNLSINQTNISFVLETDLVVFLINSIEDMEVSERVLSILSNLVSSPEGRKAISAVKDAITVLVDVLNWTDSPECQEKASYILMIMAHKAYADRQAMIEAGIVSSLLELTLVGTALAQKRASRILQCFRLDKGKQVSRSCDGGNLGLTVSAPICASSSSLVKTDGGGKECLMEEVNMMSDEKKAVKQLVQQSLQNNMMKIVKRANLRQDFVPSERFASLTSSSTSKSLPF* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3864 495 Gene3D - 253 405 IPR011989 -
Mtr3g3864 495 SMART arm_5 272 310 IPR000225 GO:0005515
Mtr3g3864 495 SMART arm_5 225 271 IPR000225 GO:0005515
Mtr3g3864 495 SMART arm_5 181 224 IPR000225 GO:0005515
Mtr3g3864 495 SMART arm_5 139 179 IPR000225 GO:0005515
Mtr3g3864 495 SMART arm_5 311 353 IPR000225 GO:0005515
Mtr3g3864 495 SUPERFAMILY ARM repeat 109 406 IPR016024 -
Mtr3g3864 495 Gene3D - 77 252 IPR011989 -
Mtr3g3864 495 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 495 - -
Mtr3g3864 495 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 236 275 IPR000225 GO:0005515
Mtr3g3864 495 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3864 Mtr-Chr3 52450631 52453239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3864 15 394 U-box Gene Family AT2G23140 29.250 1.35e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3864 - - gmx:100818576 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0271 1 3029611 3032023 Mtr3g3864 3 52450631 52453239 PCT