Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3859 ATGGAACCAACATGTGTGGATACTTCTCTTAACCTCAACGTTATCCCTTCTCGGGACAAACCAGTTGCTGCGGTTTTGGTTGAAGAGTTGGAGCGTCTAAGCAGTGAGAATAAGAGGCTAACCGAGAAACTGAACCACATGTGCAACAATTATATTGCTTTGCAAAAGCATTTGAGTCAATTCAGTCAAACAAATTTTGAAAATGAATTAGTATCACCAATATCGCGGAAGAGAAAGGCCGAGAGCGTTGAAAATTGTTTCAATCGGTTTGGCTATGCCATTGCTGAGAGCAGCACCATTACTACTGAGGAGGAGACATTCAAACACAACAACATAATCTCGCCAAAAGTTTCCAAGGTTCTTGTGCAAACAGATGCATCCAATACCGGCTTATATGTGAAGGATGGATATCAGTGGAGAAAATATGGTCAGAAAGTCACTAGAGATAACCCCTCTCCTAGGGCTTACTTCAAGTGTTCCTTTGCTCCTGGCTGCCCTGTGAAGAAGAAGGTGCAAAGAAGTGTAGAAGACCAAAATGTATTAGTGACCACATACGAAGGAGAGCACAACCATGCACATCACCAACCTGAAATGTCACTCACTAGTTCAAACCAAAGTGAAACAACCCCTACATATAATTTAGTTCCAGCATCCTCGTCCTCACCAATTAATTGGCGTACAGCTCAAGCTTCAAAGCTTGACTTGGTCCAGCCAAGACAATTGGTAGTTGATGATTCCCATAAGTCATCTATCCAGCAGTTATTAGTTCAGCAAATGGCTACTTCTTTGACAAGAGATCCTAATTTCGCAGCAGCACTTGCCACTGCCATTTCTGGAAGAATAATAATTCTGGATGTGGAAAACCCGAAGTAA 873 0.4215 MEPTCVDTSLNLNVIPSRDKPVAAVLVEELERLSSENKRLTEKLNHMCNNYIALQKHLSQFSQTNFENELVSPISRKRKAESVENCFNRFGYAIAESSTITTEEETFKHNNIISPKVSKVLVQTDASNTGLYVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPGCPVKKKVQRSVEDQNVLVTTYEGEHNHAHHQPEMSLTSSNQSETTPTYNLVPASSSSPINWRTAQASKLDLVQPRQLVVDDSHKSSIQQLLVQQMATSLTRDPNFAAALATAISGRIIILDVENPK* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3859 290 SUPERFAMILY WRKY DNA-binding domain 132 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr3g3859 290 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 290 IPR044810 GO:0003700
Mtr3g3859 290 ProSiteProfiles WRKY domain profile. 135 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr3g3859 290 Pfam WRKY DNA -binding domain 134 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr3g3859 290 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 290 - -
Mtr3g3859 290 MobiDBLite consensus disorder prediction 196 218 - -
Mtr3g3859 290 SMART WRKY_cls 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr3g3859 290 Coils Coil 23 50 - -
Mtr3g3859 290 MobiDBLite consensus disorder prediction 190 218 - -
Mtr3g3859 290 Gene3D WRKY domain 116 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3859 Mtr-Chr3 52375621 52379872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3859 6 281 WRKY Transcription Factor Family AT1G80840 46.575 1.06e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr3g3859 WRKY 5.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3859 - - gmx:100127373 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0298 1 3328783 3330738 Mtr3g3859 3 52375621 52379872 PCT