Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3841 ATGGCTTCTAAACTCTGTGACTCATGCAAATCCGCCACCGCAACTCTCTACTGCCGCCCTGACTCCGCCTTCCTCTGCGGCGCTTGTGACTCCAAAGTCCACGCCGCTAACAAACTCGCCTCCCGTCATCCTCGCGTCACTCTCTGTGAAGTCTGCGAACAAGCACCTGCACATGTCACGTGTAAAGCCGATGCAGCTTCTCTTTGCATCACCTGTGACCGTGACATCCACACTGCTAATCCTCTCGCCGCACGTCACGAGCGTGTTCCCGTTACTCCGTTCTTCGAATCCAACACTTCTCACTCTGTTAAATCGCTTAACAACAACAATAACAACTACGATGCTGTTAAAGATGAAGCTGAAGCTGCTTCGTGGTTGATCTCTGATCCGAAAGCAGATCTCAACTCATCTCCTTATCTTTTCTCTGATTCCGAAGCTATTCCGTTTATGGATCTTGATTACGGTGTAATTGAACATAAAAACGACGGTGTTGTTCCCGTTCACGGTAACTTCGATCCTTTTGTTTCTGCTTACAAGAACAACAACGTGCACTTGCATACAGAGTTAGAAACACCGTCACAGTCGCAGATTAGTCAGAGTGTTTCATCTTCCTCGATGGACGTTGGAGTTGTTCCTGACGCGAACACCGTGCCGGAGATATCAAACTGTGGTTACGGGACGGTGGCGGTGGATCGTGAAGCTAGGGTTATGAGGTACAGGGAGAAGAGGAAGAATCGAAGATTCGAGAAGACAATTCGTTATGCTTCTCGTAAAGCTTATGCGGAAACTAGGCCTAGGATTAAAGGGAGGTTTGCGAAACGCACTGATGCAGTTGATTCCATTTCTGGATACGGCGTCGTTCCCACTTGTTGA 873 0.4845 MASKLCDSCKSATATLYCRPDSAFLCGACDSKVHAANKLASRHPRVTLCEVCEQAPAHVTCKADAASLCITCDRDIHTANPLAARHERVPVTPFFESNTSHSVKSLNNNNNNYDAVKDEAEAASWLISDPKADLNSSPYLFSDSEAIPFMDLDYGVIEHKNDGVVPVHGNFDPFVSAYKNNNVHLHTELETPSQSQISQSVSSSSMDVGVVPDANTVPEISNCGYGTVAVDREARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTDAVDSISGYGVVPTC* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3841 290 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Mtr3g3841 290 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Mtr3g3841 290 SMART bboxneu5 49 91 IPR000315 GO:0008270
Mtr3g3841 290 SMART bboxneu5 1 48 IPR000315 GO:0008270
Mtr3g3841 290 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 1 287 IPR045281 GO:0009909
Mtr3g3841 290 CDD Bbox1_BBX-like 5 48 - -
Mtr3g3841 290 ProSiteProfiles CCT domain profile. 232 274 IPR010402 GO:0005515
Mtr3g3841 290 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Mtr3g3841 290 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 3 1 287 - -
Mtr3g3841 290 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Mtr3g3841 290 Coils Coil 103 123 - -
Mtr3g3841 290 CDD Bbox1_BBX-like 48 91 - -
Mtr3g3841 290 Pfam CCT motif 232 274 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3841 Mtr-Chr3 52211752 52212994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3841 1 289 C2C2-CO-like Transcription Factor Family AT5G24930 51.604 4.33e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mtr3g3841 zf-B_box 4.3e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3841 3 52211752 52212994 Mtr3g3841 3 52211752 52212994 ECH