Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3833 ATGAAGAAGGATAATCTAATTCTGAAATTCATGGTTACTTGTTGGTGTCTAGTTAATCTTTTGGGTGGAATATTGGCACAAAGTAAGAATGAAAGTAATATTGTAGTGAAAGTGGGAGCTGTAATTGATATTAGCAGTAATGAAACGGTTGGGAAGATAGGATTGAGCTGCATAAACATGTCACTCTCAGATTTCTATCTCTCTCATTCTCATTACAAAACCAGAATTCAACTCATCGTAAGGGATTCTCATAGGGACGTCGTCGCTGCAGCTGCACACGCTTTGGATCTCATAAAAAATGAGGAAGTGCATGCCATCATGGGACCAATAACAACAATGGAAGCAAATTTTGTGATTCAACTAGGAGACAAAGCTCACGTGCCCATTGTAACATTTTCAGCAACAAGCCCTTCACTTGCATCACTTCAAAGTTCATACTTCTTTCAAATATCACAAAATGATTCAACTCAAGTTAAAGCAATCACCTCAATTATCCAAGCTTTTGGATGGAAACAAGTGGTTCCCATTTATGTAGACAATAGTTTTGGTGAAGGACTTATTCCTTATTTAACTAGTGTTCTACAACAAGCCTATATACAAGTTCCCTATCTAAGTGCAATTTCTCTTTCAGCCAATGATGATGCTATCACTCAAGAACTTTATAAAATAATGACTACTATACCCGCTAGAGTATTTATTGTGCACATGTCACCAAGTCTTGGCTCTAAACTTTTTACCTTAGCAAAAAAAATTGGGATGATGAATCAAGGCTATGTTTGGATAGTAACCGATGGTATGGCTAATTTGTTTAATTCATTGAGTTTTAATGTGAGGGAATCAATGGAAGGAGTGTTGGGTCTTAGGACTTATATTCCTAGAACAAAAAAACTAGATGATTTTAGAGTTAGATGGAAAAGTAAATTCATAAATGACAATCCAAAACTTGTTGACACAAATTTGAACATTTTTGGAATATGGGCTTATGATGCTACAATTGCATTAGCAATGGCTATTGAGAAAGTTGGAATTGGAAACACCAAATTTGATTACAATGAGAGTAAAACATCAAGCAATTATTACATGCCTAATTTTGAAAAGTTTGGTATTTCACAAAATGGTGAAAAATTGAGTGAAGCTTTGTCAAACACTAGATTTAATGGTCTTAGTGGTGATTTCAATCTTCTTGGTGGGAAGTTACAAGCATCAATATATGAAATAATTAATGTGATTGGTGATGGTGAAAAGAGAGTTGGATTTTGGACACCAGATAAAGGGTTGTCTAGAAATTTGGATACAGAAGGCCTAATAGGCAATAATAACATTATGTATTCTTGTTCGAAAAATGTTCTTGGGTCAATCATATGGCCAGGGGATATGTACTCTATTCCAAAGGGATCGGAAATTCCTACCATTGGTAAGAAGTTGAGGATAGGAGTTCCAGTTAAAAATGGATTTAACTACACTGAATTCTTGAAAGTAACATATGATCCTAGTACCAATTCAACACAAGCCACTGGCTTCAGCATTGATATCTTCAAAGCTGTGCTAGATGTTTTGCCTTATGCCTTACCATATGAATTTGTTCAATTTGCAAAGCCTGATGGTGAGATGGCAGGAACCTACAATGAGTTGATCAATCAACTTCACGACGGGAAATTTGATGCGGTAGTGGGGGATATAACAATCACTGCAGATAGGTCAAACTGTGTTGATTTCACAATGCCATACACAGAATCTGGTGTGACAATGGTTGTTTCAATGAAAGACAGCAGAAAGAAAAATGCATGGGCCTTTTTGAAGCCACTCACATGGGATCTTTGGGTGACATCAGCTTGTTCATTTGTGTTCATTGGATTTGTTGTTTGGGTCCTTGAACATAGAATAAACAATGATTTCAGGGGACCACTCTCTCATCAGATTGGCACAAGCTTATGGTTTTCCTTCTCAACTATGGTCTATGCTCATAGAGAGAAAGTAGTGAGTAACTTGGCAAGATTTGTGGTGGTTGTATGGGTTTTTGTGGTTCTAATTCTGGTTCAAAGTTACACTGCAAGCTTGACTTCTCTCTTAACAGTTGAACAACTAAGGCCAGCTATTACAGACGTTAACCAACTTCTAAAGAATAAGATGAATGTTGGCTATCTCAAAGGTTCTTTTGTTGAAGGAATCTTGAAGGACTTGGGTTTCGAAGATTCTTATCTCATTACTTATCAATCTGCTGAAGAATGTAATGAGCTTTTTATAAAAGGAAGTGTAAATGGTGGCATTGATGCTGCTTTTGACGAAGTTCCCTATATTAAGCACTTTCTTGGAACTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATTTAAAACTGGTGGCTTTGGCTATGCTTTTCCAAAAGGCTCACCTCTTGTGGCTGACATTTCAAGGGCAATCTTAAATGTAACTCAAGGAGACAGAATGAAAACAATTGAGAATGCATGGTTAAAGAAAACTAGTTGTCTAGATTCTAACACAGAAATTTCCTCAAATAACAGTCTTGGACTTGAAAGCTTTTGGGGTCTGTTTCTCATTGCAGGGATTGCTTCCCTATTAGCACTCCTAATCTTTGTTATCACATTCCTATATCAACACAAACACATTTGGCTACCCAATAGTCCAAGTAATTCAATATGGAGACGAATTCGCGTCTTGGTAATGATATTTGATCAAAGAGACTTAAACTCTCACACATTCAAGAAGAGTGGAAATAAACATGAAAGCAGTAATAGTCCTCATCATGATGATTTCGGTGCAGTTGAGGCCTCTCCAGGTACACATTGTCCGCCTAGTCCATCTAGTCAAACTGAATCAAACGTTTCCTTGAATGGCGATTTTAGTCCAAACACGGAATTGGATGTTGTACAAATTACTAATCAGGAAGTTTCCCCTGTGAACAACTGTGAAATTGACCTCTAA 2946 0.3683 MKKDNLILKFMVTCWCLVNLLGGILAQSKNESNIVVKVGAVIDISSNETVGKIGLSCINMSLSDFYLSHSHYKTRIQLIVRDSHRDVVAAAAHALDLIKNEEVHAIMGPITTMEANFVIQLGDKAHVPIVTFSATSPSLASLQSSYFFQISQNDSTQVKAITSIIQAFGWKQVVPIYVDNSFGEGLIPYLTSVLQQAYIQVPYLSAISLSANDDAITQELYKIMTTIPARVFIVHMSPSLGSKLFTLAKKIGMMNQGYVWIVTDGMANLFNSLSFNVRESMEGVLGLRTYIPRTKKLDDFRVRWKSKFINDNPKLVDTNLNIFGIWAYDATIALAMAIEKVGIGNTKFDYNESKTSSNYYMPNFEKFGISQNGEKLSEALSNTRFNGLSGDFNLLGGKLQASIYEIINVIGDGEKRVGFWTPDKGLSRNLDTEGLIGNNNIMYSCSKNVLGSIIWPGDMYSIPKGSEIPTIGKKLRIGVPVKNGFNYTEFLKVTYDPSTNSTQATGFSIDIFKAVLDVLPYALPYEFVQFAKPDGEMAGTYNELINQLHDGKFDAVVGDITITADRSNCVDFTMPYTESGVTMVVSMKDSRKKNAWAFLKPLTWDLWVTSACSFVFIGFVVWVLEHRINNDFRGPLSHQIGTSLWFSFSTMVYAHREKVVSNLARFVVVVWVFVVLILVQSYTASLTSLLTVEQLRPAITDVNQLLKNKMNVGYLKGSFVEGILKDLGFEDSYLITYQSAEECNELFIKGSVNGGIDAAFDEVPYIKHFLGTYSCSKYVMVEPRFKTGGFGYAFPKGSPLVADISRAILNVTQGDRMKTIENAWLKKTSCLDSNTEISSNNSLGLESFWGLFLIAGIASLLALLIFVITFLYQHKHIWLPNSPSNSIWRRIRVLVMIFDQRDLNSHTFKKSGNKHESSNSPHHDDFGAVEASPGTHCPPSPSSQTESNVSLNGDFSPNTELDVVQITNQEVSPVNNCEIDL* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3833 981 MobiDBLite consensus disorder prediction 936 954 - -
Mtr3g3833 981 Pfam Receptor family ligand binding region 57 411 IPR001828 -
Mtr3g3833 981 CDD PBP1_GABAb_receptor_plant 37 430 IPR044440 -
Mtr3g3833 981 Gene3D - 595 722 - -
Mtr3g3833 981 Gene3D - 476 594 - -
Mtr3g3833 981 SMART GluR_14 474 827 IPR001320 GO:0015276|GO:0016020
Mtr3g3833 981 Pfam Bacterial extracellular solute-binding proteins, family 3 501 826 IPR001638 -
Mtr3g3833 981 MobiDBLite consensus disorder prediction 908 954 - -
Mtr3g3833 981 Gene3D - 723 832 - -
Mtr3g3833 981 SUPERFAMILY Periplasmic binding protein-like I 35 465 IPR028082 -
Mtr3g3833 981 Gene3D - 155 319 - -
Mtr3g3833 981 Gene3D - 370 475 - -
Mtr3g3833 981 SUPERFAMILY Periplasmic binding protein-like II 450 827 - -
Mtr3g3833 981 Pfam Ligand-gated ion channel 827 858 IPR001320 GO:0015276|GO:0016020
Mtr3g3833 981 MobiDBLite consensus disorder prediction 908 923 - -
Mtr3g3833 981 PIRSF IGluLR_plant 6 957 IPR017103 -
Mtr3g3833 981 CDD GluR_Plant 473 825 - -
Mtr3g3833 981 PANTHER GLUTAMATE RECEPTOR 2.9 36 922 - -
Mtr3g3833 981 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3833 Mtr-Chr3 52152017 52158967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3833 2 978 Ion Channels AT2G29120 48.990 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3833 K05387 - tcc:18587654 1075.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3833 3 52152017 52158967 Mtr3g3833 3 52152017 52158967 ECH