Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3828 ATGAATTCTCCAATATTAATTCAAATTAGCTATACCCACATAAAACATTATTATTATTATATGAATGTAACTCATATACTACACATGGATCATCATCATCATCATGTCACTACTGGTCAGGTTAAAACTCCACCATCATCATCATCATCTTCTACTTCAAGTGGAAATAATGATAATAAGACTGAGAAGAAGTACAAAGGTGTGAGATTGAGAAAGTGGGGAAAATGGGTATCTGAAATAAGGCTACCAAATAGTCGTGAAAGAATATGGTTAGGATCATATGATTCAGCTGAGAAAGCAGCTAAAGCATTTGATGCTGCACTTTATTGTCTTCGTGGTCGTCATGCAAATTTCAATTTCCTTGATACACCTCTCAATTTGGATATCAATGCAGTTTCTAACAATTCGCTTACACCACAACAAATTCGAGAGGTTGCTGCAAATTTTGCTAACAAAAATCCACCAATTATTGATAATAATAATAATGGAAATAATAGTAATGTTCAATCCAATATGGTGACGGAAATTGGTGGCTCTTCATCTACAACTACTATGTATAACAATGGTAGCACGATTGATTGGACATTTTTGAACATGTTGGATGGTTCAAATACTCATGATGCTAATTTTGTTGGGTCTGATTATGGTCTATTGTACTCTGACCTAGACAAGATGATGCATTCGGGTGAGTTAATGTATTCCATTCCACCACCACCACTTTTTGAGGATTATCAGAACTTATCATCAGTTGAAGAATATGATGATGATAATGGCGATCCTTTTTCTCATCAATCATTCCTTTGGAACTGGAATTTCTGA 819 0.3455 MNSPILIQISYTHIKHYYYYMNVTHILHMDHHHHHVTTGQVKTPPSSSSSSTSSGNNDNKTEKKYKGVRLRKWGKWVSEIRLPNSRERIWLGSYDSAEKAAKAFDAALYCLRGRHANFNFLDTPLNLDINAVSNNSLTPQQIREVAANFANKNPPIIDNNNNGNNSNVQSNMVTEIGGSSSTTTMYNNGSTIDWTFLNMLDGSNTHDANFVGSDYGLLYSDLDKMMHSGELMYSIPPPPLFEDYQNLSSVEEYDDDNGDPFSHQSFLWNWNF* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3828 272 Pfam AP2 domain 64 113 IPR001471 GO:0003700|GO:0006355
Mtr3g3828 272 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 47 272 - -
Mtr3g3828 272 MobiDBLite consensus disorder prediction 39 58 - -
Mtr3g3828 272 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Mtr3g3828 272 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Mtr3g3828 272 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 47 272 - -
Mtr3g3828 272 CDD AP2 63 120 IPR001471 GO:0003700|GO:0006355
Mtr3g3828 272 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Mtr3g3828 272 MobiDBLite consensus disorder prediction 34 63 - -
Mtr3g3828 272 Gene3D AP2/ERF domain 63 122 IPR036955 GO:0003700|GO:0006355
Mtr3g3828 272 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Mtr3g3828 272 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3828 Mtr-Chr3 52106778 52107631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3828 62 222 AP2-EREBP Transcription Factor Family AT1G74930 45.833 7.71e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr3g3828 AP2 1.4e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3828 3 52106778 52107631 Mtr3g3828 3 52106778 52107631 ECH
Mtr3g3828 3 52106778 52107631 Mtr1g0320 1 3619159 3619854 ECH