Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3827 ATGAATGTAACTACTACTATACTACACATGGATAATCAAATCACCACCGATCAAATTAAAACCTTATCATCATCTTCTTCTACCTCAAGTGGAAATAATGATAATAAGAACAAGAAGTACAAAGGTGTGAGATTGAGAAAGTGGGGAAAATGGGTATCTGAAATAAGGCTACCAAATAGTCGTGAAAGAATATGGTTAGGATCATATGATTCAGCTGAGAAAGCAGCTAAAGCATTTGATGCTGCACTTTATTGTCTTCGTGGTCGTCATGCAAATTTCAATTTCCTTGATACACCTCTCAATTTGGATATCAATGCAGTTTCTAACAATTCACTTACACCACAACAAATTCGAGAGGTTGCTGCAAATTTTGCTAACAAAAATCCACCAATTATTGATAATAATAATAATGGAAATAATAGTAATGTTCAATCCAATATGGTGACGGAAATTGGTGGCTCTTCATCTACAACTACTATGTATAACAATCGTAGCACGATTGATTGGACATTTTTGAACATGTTGGATGGTTCAAATACTCATGATGCTGACTTTGTTGGGTCTGAAAATATTGGGGGTTTCTATTCTGACTTAGAAAAGTTGTATTCGGGTGAGCTAATGTATTCCATTGCACCACCACTTATTGAAGAACACGATGATGATGATGATGATAATGACCCATTTTCCCATCAATCATTCCTTTGGAACTGGAACTTTTGA 720 0.3514 MNVTTTILHMDNQITTDQIKTLSSSSSTSSGNNDNKNKKYKGVRLRKWGKWVSEIRLPNSRERIWLGSYDSAEKAAKAFDAALYCLRGRHANFNFLDTPLNLDINAVSNNSLTPQQIREVAANFANKNPPIIDNNNNGNNSNVQSNMVTEIGGSSSTTTMYNNRSTIDWTFLNMLDGSNTHDADFVGSENIGGFYSDLEKLYSGELMYSIAPPLIEEHDDDDDDNDPFSHQSFLWNWNF* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3827 239 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Mtr3g3827 239 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Mtr3g3827 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 239 - -
Mtr3g3827 239 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Mtr3g3827 239 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Mtr3g3827 239 CDD AP2 42 95 IPR001471 GO:0003700|GO:0006355
Mtr3g3827 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 23 239 - -
Mtr3g3827 239 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Mtr3g3827 239 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Mtr3g3827 239 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3827 Mtr-Chr3 52098080 52099137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3827 32 187 AP2-EREBP Transcription Factor Family AT1G74930 47.853 1.09e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr3g3827 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3827 - - mtr:MTR_3g105510 336.65