Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3824 ATGGCGGATGTAATGCTAATGAAAGAAATTGAAGACAAAGCGTTGCTTCTTGGTATCGATCTATCCTCTATCGATCTTGATTCCATTCACCTCCCTCCAGGTGACAACTGCGGAATCCCCAGCGACGATGATGTTGATCAAGAGGAGAATCTGGAGTTTGATTCTGGATTTGGCAATATTATTGTAGTGGATAATCTACCCGTTGTTCCCAAGGAGAAATTCGAGAAGCTTGTAACAGTTGTTAGGAAAATTTATAGTCAGATTGGTGCTATTAAAGAGGACGGTCTCTGGATGCCTGTTGATCCCGCTACTGAAAAGTCCTTAGGTTATTGCTTCATCGAGTACAACACTCCTCAGGAAGCTGAGCTTGCTAAAGAGAAGACTCAGGGATACAAACTGGATCGTTCCCATATATTTTCTGTTAGTATGTTCGATGATTTTGATCGATTCATGAAAGTGCCAGACGAGTGGGCTCCTCCTCCAAACAAGGAATATGCTCCAGGGGAAAATCTGCAACAATGGCTTACTGATGCTAAGGCACGAGACCAGTTTGTGATTCGTGCTGGTTCAGATACGGAGGTTTTGTGGAATGATGCAAAGCTTTTAAAGCCCGACCCTGTTTATAAACGTGCTTTTTGGACGGAGAGTTTTGTACAATGGTCACCTTTGGGTACTTACTTGGCAACTGTTCACCGTCAGGGGGCAGCAGTTTGGGGAGGTGCTACCACCTTCAACCGTCTCATGCGTTATGCACATCCTCAGGTTAAGCTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTATAGCAGCCATGAACCAAGCAATCCTCGAGATGCTAATAGGGTTGTGATCAACATATTTGATGTGAGGACTGGTAAAGTGATGAGAGATTTTAAGGGAAGTGCTGATGATTTTGCTATTGGAGGTACTGGGGGTGTCACTGGAGTGTCATGGCCTGTTTTCAAATGGAGCGGTGGAAGAGATGATAAGTACTTTGCAAGGATGGGAAAAAATGTACTGTCTGTATATGAGACAGAAACATTTTCTCTTGTTGACAAAAAATCTTTGAAGGTTGAAAATATAATGGATTTCAGCTGGTCACCGACTGATCCAATCATTTCACTGTTTGTTCCTGAGACAGGAGGTGGTAACCAGCCTGCTAGGGTAAGTCTTGTTCAAATCCCCAGCAAAGAAGAACTCAGGCAAAAGCTTCTTTTTAATGTCAGTGACTGCAAGATGTACTGGCAGAGCAATGGAGAATACCTTGCTGTTAATGTTGATCGATATACCAAAACAAAGAAAAGCACATTCACAGGCTTTGAGCTTTTCCGTATAAAGGAACGTGACATACCTATTGAAGTTCTGGAGCTCGAGAATAAGAATGATAAGATCATTGCATTTGCTTGGGAGCCAAAGGGACATAGATTTGCTGTTATTCATGGTGATAACCCTAAACCTGATATTAGTATCTACTCAATGCGAACTGCTCAGAACACTGGCCGAGTTTCAAAGCTCACTACTCTGAAAGGCAAGCAGGCAAATGCTTTGTTTTGGTCACCAGCAGGTCGGTTCATTGTACTAGCAGGGTTGAAAGGTTTCAATGGACTGTTAGAATTTTACAATGTTGATGAGCTTGAAACCATGGCTAATACTGAACATTTTTATGCAACTGATGTTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCTGTAACTTCAGTTCATGAAATGGAAAATGGATTCAATATATGGTCTTTCAATGGCAAACATCTTTATCGGATATTGAAGGATCATTTCTTTCAGTTCTTATGGAGACCCAGACCAGCTTCTTTCTTGACTGCTGAGAAGGAGGAAGAGATTGCAAAGAACTTGAAGAAGTATAGTAAGAAATATGAAGCTGAAGACCAAGATGTTTCATTGCTGCTGAGTGAGCAAGAGCGTGAGAAGCGTAGGGTCTTGAAAGAAGATTGGGACAAGTGGGCCAATGAGTGGAAGCTGTTGCATGAAGAAGAGAAGCTAGAGAGGGAAAATCTGAGGGACGGAGAAGCTAGTGACGAGGAAGAGGAATATGAAGCCAAGGACATTGAAGTTGAGGAAGTAGTCGATGTTACCAAAGAGATCCTTCAAGTTGAGGAGTATTAG 2151 0.4221 MADVMLMKEIEDKALLLGIDLSSIDLDSIHLPPGDNCGIPSDDDVDQEENLEFDSGFGNIIVVDNLPVVPKEKFEKLVTVVRKIYSQIGAIKEDGLWMPVDPATEKSLGYCFIEYNTPQEAELAKEKTQGYKLDRSHIFSVSMFDDFDRFMKVPDEWAPPPNKEYAPGENLQQWLTDAKARDQFVIRAGSDTEVLWNDAKLLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGTGGVTGVSWPVFKWSGGRDDKYFARMGKNVLSVYETETFSLVDKKSLKVENIMDFSWSPTDPIISLFVPETGGGNQPARVSLVQIPSKEELRQKLLFNVSDCKMYWQSNGEYLAVNVDRYTKTKKSTFTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDISIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGFNGLLEFYNVDELETMANTEHFYATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPASFLTAEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRVLKEDWDKWANEWKLLHEEEKLERENLRDGEASDEEEEYEAKDIEVEEVVDVTKEILQVEEY* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3824 716 Gene3D - 416 628 IPR015943 GO:0005515
Mtr3g3824 716 SUPERFAMILY DPP6 N-terminal domain-like 217 598 - -
Mtr3g3824 716 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 6 711 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mtr3g3824 716 Coils Coil 617 637 - -
Mtr3g3824 716 Gene3D - 58 142 IPR012677 -
Mtr3g3824 716 PANTHER BNACNNG51870D PROTEIN 6 711 - -
Mtr3g3824 716 PIRSF Transl_init_eIF3b 8 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mtr3g3824 716 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Mtr3g3824 716 SUPERFAMILY RNA-binding domain, RBD 57 143 IPR035979 GO:0003676
Mtr3g3824 716 Pfam Eukaryotic translation initiation factor eIF2A 405 605 IPR013979 -
Mtr3g3824 716 SMART rrm1_1 60 142 IPR000504 GO:0003723
Mtr3g3824 716 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 47 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mtr3g3824 716 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 146 IPR000504 GO:0003723
Mtr3g3824 716 CDD RRM_eIF3B 58 141 IPR034363 -
Mtr3g3824 716 Gene3D - 199 384 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3824 Mtr-Chr3 52067006 52071311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3824 5 712 Eukaryotic Initiation Factors Gene Family AT5G27640 76.056 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3824 K03253 - gmx:100817394 1317.37