Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3822 ATGGATTTATCAAACGACAACTTGGATTCATCAAACGACAATGATGATCAAAATCAAACTAAAAATCTCAAGAGAAAATTCGATCACTTGTATGCAAAACCCAATGTTGAACAAGATTCTCCAGCTCAGGAAGAAACCCTCATTGCCAACTTGGTTCCTAGAAGGGATCAGTTGGAGGCATTTGAAGTTGCAAAAAAGAGGAACACAATTGCAATTATGGATACAGGTTCAGGAAAAACATTGATTGCTATACTTCTTATCAAAGAGACTGGTCAAGCTATTAGGTCCAGTGGTGTCAAAAAATTGATTGTTTTCTTAGCTCCCACTGTTCACCTTGTGAGTCAGCAATGCAAGAATATAAAGCTGAATACAGATTTACAAGTTGAGGAATACTATGGTTCTAAAGGAGTTGATACATGGAATTTGAAGAGCTGGCAGAAGGAAATTAGTGACAATGATGTAATGGTTATGACACCTCAGATTCTTTTGGATGCCTTCAGAAAAGCATTCCTGAGTATAGAAATGATATGCTTGATGGTTATTGATGAGTGTCATTGGGCATCAGGCAACCATCCCTATGCAAAAATAATGGCGGAGTTTTATCACCAAGCTAATGAAAAGCCAAAGATTTTCGGGATGACAGCATCACCAGTTGGTAAAAGAGGTGTTTCTTCTACTTTGGTTTGTGAGGGTCAGATATCAGACCTTGAAAACATCTTGGATTCTCGGAGTTACGTTGTTAAAGATCGGACGGAGATGGATGTATATATCCCATCTGCAAAAGAGAGTTGTAGATTCTATGACCCGGCACGGTTTCATGCTTTGAGTTTGAAGCCAAAAATTGAAGCCTCGTGGTCGAAGTGTGATGTGTTGTTGTCAGAATTTCAAAGTGATTATAAGGATATGGACCAAAAATTTAAGGCATTGCATCAGCGGATGTCCAATGAGCTTGCCAAAATTTTATATTGCCTTGAAGATCTTGGACTGTTGTGTGCTTATGAGGCAGCTAAAATCTGTCAACAGAAATTCTCCAAAATTCATGGAGAGTGTGAAGTTTACAGAAAAGCCAATCTTCAGTGTGTAACTATCATTGAAGAAGTAATCAAAATAATTGAAGAATCCCTCCATCTTGCCGATGAAATGATTTTGGATGTTGAATTTGATTGTTCAAAGGCAGTAGGCATGGGATACATTTCACCAAAATTACTAGAACTTATTAAACTCTTCGAAACATTTGGAGAACCTAGTCAGTTATTGTGCCTCATCTTTGTTGAAAGAATCATTACAGCAAAGGTGATTGAAAGATTTGTGAAAAAAGTTTCCCAGATATCTCATCTCACAGTTGCCTATGTAACTGGAAGCAATACATCAGCTGATGCATTGGCTCGTAAGAGGCAGAAAGAGATATTGGATTCTTTCCGATCCGGAAAGGTCAATCTTCTATTTACTACTGATGTACTTGAGGAAGGAATTCACGTGCCAAACTGCTCGTGTGTGATACGTTTTGACCTCCCCACGACAGTTTGTAGTTATATCCAATCTCGTGGAAGATCTAGACGTGCTAACTCCCAATTTATTTTGATGTTGGAGAGGGGAAATTTGAAGCAAAGAAATCAGCTTTTTGACATAATCAGGAGCGAGCGTTCCATGAATGATGCAGCTGTTAGTAAAGACCATGAATCTAATTTAAGGGCGTTTACTGTAAGGAAAACAGAATCATACTGTGTGGATTCTACCGGAGCATCAGTCACTTTAGACTCCAGTGTCAGTCTTATAAATCAATATTGCGAAAAGCTCCCACGAGACAAGTACTCCTCTGCAAAGCCCAATTTTGTATCGCTGCCTATGGAGGGAGGAGGGCACGTGTGTAAATTAATATTACCACCTAATGCAGCTTTCCAAACACTAGTTGGTCCTTCAGGAAAAGATGTTCGACAGGCAAAGACTCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGTGCCTTAAATGACCATCTTGTTCCATTCGTTGAAGATCCTTTAGAAGCAGACAATATTATAAAAAACAAGGAATCAAGTGCAGCTGCAGCTGCAGGTGCAGGGACCACGAAAAGAAAGGAGTTACACGGCACAGCCAGTGTTCGAGCATTATGTGGTTCATGGGGAGACAAACCTGATGGAGCCAAATTTCATGCTTATAAATTTGAATTCAAATGTAATATTGTTTCTGAAATTTATTCTGGATTCGTTCTTCTGGTCGAGTCAAAGCTTGACGATGATGTGGGAAATATAGAATTAGATTTGTATTTAATCTCAAAGATGGTGAAGACTTCTGTCATTTCATGTGGCCAAGTTGATTTGGATGCTGAACAGGTGACAAAAGCAAAAGGCTTCCATGAGCTTTTTTTCAATGGTTTATTCGGGAGATTGATTCGTAAGTCCACAACAGTCCAAGGGGAAAGGGAATTTTTACTGCAGAAAGACTCGGAACTATTGTGGAGTCCAAAAAACTCGTATTTGCTTCTACCACTTGAGAAGTCAAATGATATATGTATCAGATCTTTGCAAATACATTGGTCTGCAATCAATTCTTGTGCTTCTGCTATTGAATTTGTGAGGCAGAGATTTTCGTTGGTTACGGAAGTTTCTGATGATAACAGCAAAATCATATCACCACCTTGTGATACCGATAACAGCAAAATCATATCACCACCTTGTGATACCGATAACAGAAAAATCATATCACCACCTTGTGATACCCGTTCATCATCGGATATGGAATGTGAAAGCACAAACATGTTTCACTTTGCTAATTGTGTTGTTGATGTTAGTAGTGTGAAAGATAATGTAGCTTTGGCTATTCATACTGGAAAGGTATATTGTATCATTGATGTAGTTGATAACTCATCCGCTGAAAGTCCTTTTGACGGAAATAGTGACAAGTCTGGAGCAGAAGACAAGATGACGTTTACACAATATTTCCAGAAAAGGTATGGAATCACACTAAGACATCCAGAACAGCCTTTGTTAAGGTTGAAGCAAGGTCATAATGCGCACAATCTTTTTTTGAACCTTCCCGAGGAAGATGGTGGGGACAAGTCATCACAAGTTGGCCCGGTAGCCCCAAAAGTTCCTGTACATGTTCACATTCCATCGGAGCTTCTTTGCCTTCTTGATGTTAAAAGAGATGTGTACAAGTCAATGTACTTGCTACCATCTCTTATGTACCGTATTGAATCTTTGATGTTATCCAGTCAGCTTAGAGCAGAGATAAATGGTCACACAGACAATTTCAAGATACCTAGCTCTCTGGTTCTTGAAGCACTTACAACTTTAAGATGCTGTGAAAAGTTTTCTATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAATATGCGGTGAGCTGTCATCTCTATCTTAAATATCCTAAGAAACATGAAGGGCACTTATCGTCCTTGAGACAATGGGCTGTTCGTAATTCAACCCTACACAAGCTGGGAACAGATCACAACTTACAGGGATATATCCGAGACTCTGCATTTGAACCGCGTCGTTGGATTGCTCCTGGACAAGACTGTATACACACTGTTCCTTGTGATTGTGGGTTGGAAACCTTAGAAGTGCCTTTAGATGTAAAGTTCCACACTGAAGATCCAAAAGTTGTGGTTGGAAAGTTGTGTGATAGGGGTCATCGCTGGATGTGCTCGAAGACTATTGCTGATTGTGTTGAAGCTCTGATAGGAGCATACTATGTAGGTGGTGGATTGATTGCTTCACTTCACATGATGAAATGGCTTGGGATTGATTCCGGACTTGAACCGTCAATGGTTGATAAAGCCATTACTGCTGCGTCTCTCCACACATATACGCCAAAAGTAAATGAGATTGCCAGCCTTGAGGCGAAAATTGGATACGAATTTTCAGTCAAGGGACTCTTAGTGGAGGCAACCACACATTTGTCTGAGTCAGAACATGGAACTGGCTGCTGCTATGAGAGGCTTGAATTCCTTGGTGACTCAGTATTGGACCTGCTCATCACATGGCATCTATTTCAGAGTCATACCGAAATTGATCCGGGAGAGTTGACTGACTTGCGTTCTGCTTCTGTGAATAATGAAAATTTTGCTCAAGCTGCTGTTAGACGAAACCTTCACCAGCACCTTCTGCATAGCTCGGGATTATTACAAAGCCAGATATTAGAATATGCGAAAGTTATTTCTGAACCAGAAGACAATGCCGTACCACTCCAAGGGATTAAAGCTCCTAAGGCACTTGGAGATCTAGTAGAGAGTATTGCTGGGGCTATACTAATTGATACCAAGCTTGACCTAGATCAAGTGTGGAAGGTTTTCAATCCTCTGCTATCTCCAATTGTTACTCCTGAAAAACTTGAACTGCCTCCATTGCGTGAATTAATGCAATTATCCGACTCTCTTGGATATTTTGTAAAAGTAAAAGTAAGTCATGATAAGAAGGGAACCATGGAGCATGTTGAGATCCGTGTACAGTTGCCAAATGAACGATTGGTTCGAGAGGGAAAGGGACCAAATAAAAAATCTGCGAAAGGAGACGCTGCTTTTCAGTTGTTGAAGGATCTTGAGAAAAGGGGAATTTCATATAGCTCGTCCAAGGGAAAAAAAGTAATGGATTACACTATTCCCGCTTGTCAAATTGAAGACCAACCCCCAAAGCCAGTAGCAATTAAAAAGCCCAAATTGGACAAAACTAACTCAGCTGCAGATGAATCTACTGGTGATCTGAAGGATGTTTCCAGTAAAGCCTCTGATACTAGCGGTTCTATTCCAGTTGTTTCATCAATCAAAATGAATAAAAAGGGAGGACCTCGGAGCGAACTGTATGAAGTGTGCAAGAAAAAGTTATGGCCATTGCCTTCCTTTGATTCAACAGAATATAAAGACAGAACTCTATTTGAATCGTGTAAAGGGCTGGAAGGAAGCAAAGGATTGAACTGTTTTGTGTCAAAAATAACTTTGGGCATACCAGGTTATGGTGATATAAAATGCCAAGGAGAAGCTAGAAGTGATAAGAAGAGCTCATATGACTCTGCTGCAGTCCAAGCGCTTTATGAGTTACAACGGCTTGGAAAAATTATGATTAAGATTGATGATGGCGATGTAGAATGCCAAGGAGAAGCCACAAGTGGTATAAAGAGCTCACTTGACTCTGCTGCAGTCCAATAA 5193 0.4005 MDLSNDNLDSSNDNDDQNQTKNLKRKFDHLYAKPNVEQDSPAQEETLIANLVPRRDQLEAFEVAKKRNTIAIMDTGSGKTLIAILLIKETGQAIRSSGVKKLIVFLAPTVHLVSQQCKNIKLNTDLQVEEYYGSKGVDTWNLKSWQKEISDNDVMVMTPQILLDAFRKAFLSIEMICLMVIDECHWASGNHPYAKIMAEFYHQANEKPKIFGMTASPVGKRGVSSTLVCEGQISDLENILDSRSYVVKDRTEMDVYIPSAKESCRFYDPARFHALSLKPKIEASWSKCDVLLSEFQSDYKDMDQKFKALHQRMSNELAKILYCLEDLGLLCAYEAAKICQQKFSKIHGECEVYRKANLQCVTIIEEVIKIIEESLHLADEMILDVEFDCSKAVGMGYISPKLLELIKLFETFGEPSQLLCLIFVERIITAKVIERFVKKVSQISHLTVAYVTGSNTSADALARKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPTTVCSYIQSRGRSRRANSQFILMLERGNLKQRNQLFDIIRSERSMNDAAVSKDHESNLRAFTVRKTESYCVDSTGASVTLDSSVSLINQYCEKLPRDKYSSAKPNFVSLPMEGGGHVCKLILPPNAAFQTLVGPSGKDVRQAKTLVCLEACKKLHQMGALNDHLVPFVEDPLEADNIIKNKESSAAAAAGAGTTKRKELHGTASVRALCGSWGDKPDGAKFHAYKFEFKCNIVSEIYSGFVLLVESKLDDDVGNIELDLYLISKMVKTSVISCGQVDLDAEQVTKAKGFHELFFNGLFGRLIRKSTTVQGEREFLLQKDSELLWSPKNSYLLLPLEKSNDICIRSLQIHWSAINSCASAIEFVRQRFSLVTEVSDDNSKIISPPCDTDNSKIISPPCDTDNRKIISPPCDTRSSSDMECESTNMFHFANCVVDVSSVKDNVALAIHTGKVYCIIDVVDNSSAESPFDGNSDKSGAEDKMTFTQYFQKRYGITLRHPEQPLLRLKQGHNAHNLFLNLPEEDGGDKSSQVGPVAPKVPVHVHIPSELLCLLDVKRDVYKSMYLLPSLMYRIESLMLSSQLRAEINGHTDNFKIPSSLVLEALTTLRCCEKFSMERLELLGDSVLKYAVSCHLYLKYPKKHEGHLSSLRQWAVRNSTLHKLGTDHNLQGYIRDSAFEPRRWIAPGQDCIHTVPCDCGLETLEVPLDVKFHTEDPKVVVGKLCDRGHRWMCSKTIADCVEALIGAYYVGGGLIASLHMMKWLGIDSGLEPSMVDKAITAASLHTYTPKVNEIASLEAKIGYEFSVKGLLVEATTHLSESEHGTGCCYERLEFLGDSVLDLLITWHLFQSHTEIDPGELTDLRSASVNNENFAQAAVRRNLHQHLLHSSGLLQSQILEYAKVISEPEDNAVPLQGIKAPKALGDLVESIAGAILIDTKLDLDQVWKVFNPLLSPIVTPEKLELPPLRELMQLSDSLGYFVKVKVSHDKKGTMEHVEIRVQLPNERLVREGKGPNKKSAKGDAAFQLLKDLEKRGISYSSSKGKKVMDYTIPACQIEDQPPKPVAIKKPKLDKTNSAADESTGDLKDVSSKASDTSGSIPVVSSIKMNKKGGPRSELYEVCKKKLWPLPSFDSTEYKDRTLFESCKGLEGSKGLNCFVSKITLGIPGYGDIKCQGEARSDKKSSYDSAAVQALYELQRLGKIMIKIDDGDVECQGEATSGIKSSLDSAAVQ* 1731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3822 1730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 60 235 IPR014001 -
Mtr3g3822 1730 SMART riboneu5 1308 1461 IPR000999 GO:0004525|GO:0006396
Mtr3g3822 1730 SMART riboneu5 1099 1272 IPR000999 GO:0004525|GO:0006396
Mtr3g3822 1730 SMART PAZ_2_a_3 919 1079 IPR003100 GO:0005515
Mtr3g3822 1730 Gene3D - 395 555 IPR027417 -
Mtr3g3822 1730 SMART helicmild6 434 522 IPR001650 -
Mtr3g3822 1730 Pfam Ribonuclease III domain 1329 1437 IPR000999 GO:0004525|GO:0006396
Mtr3g3822 1730 Pfam Ribonuclease III domain 1117 1251 IPR000999 GO:0004525|GO:0006396
Mtr3g3822 1730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 526 IPR027417 -
Mtr3g3822 1730 SMART ultradead3 49 246 IPR014001 -
Mtr3g3822 1730 MobiDBLite consensus disorder prediction 1 23 - -
Mtr3g3822 1730 Pfam Type III restriction enzyme, res subunit 59 217 IPR006935 GO:0003677|GO:0005524|GO:0016787
Mtr3g3822 1730 Gene3D Ribonuclease III domain 1289 1461 IPR036389 GO:0004525|GO:0006396
Mtr3g3822 1730 ProSiteProfiles Ribonuclease III family domain profile. 1080 1252 IPR000999 GO:0004525|GO:0006396
Mtr3g3822 1730 PANTHER DICER-RELATED 37 1700 - -
Mtr3g3822 1730 Pfam Helicase conserved C-terminal domain 417 522 IPR001650 -
Mtr3g3822 1730 MobiDBLite consensus disorder prediction 1 17 - -
Mtr3g3822 1730 Gene3D Ribonuclease III domain 1082 1262 IPR036389 GO:0004525|GO:0006396
Mtr3g3822 1730 MobiDBLite consensus disorder prediction 1562 1586 - -
Mtr3g3822 1730 ProSiteProfiles PAZ domain profile. 942 1024 IPR003100 GO:0005515
Mtr3g3822 1730 CDD RIBOc 1099 1263 IPR000999 GO:0004525|GO:0006396
Mtr3g3822 1730 CDD DEXHc_dicer 53 249 - -
Mtr3g3822 1730 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1497 1532 IPR014720 -
Mtr3g3822 1730 Gene3D paz domain 923 1073 - -
Mtr3g3822 1730 SUPERFAMILY PAZ domain 942 1053 IPR036085 GO:0005515
Mtr3g3822 1730 ProSitePatterns Ribonuclease III family signature. 1329 1337 IPR000999 GO:0004525|GO:0006396
Mtr3g3822 1730 Gene3D Dicer dimerisation domain 583 681 IPR038248 -
Mtr3g3822 1730 SUPERFAMILY RNase III domain-like 1292 1458 IPR036389 GO:0004525|GO:0006396
Mtr3g3822 1730 Gene3D - 1618 1697 - -
Mtr3g3822 1730 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 37 1700 - -
Mtr3g3822 1730 SUPERFAMILY RNase III domain-like 1093 1266 IPR036389 GO:0004525|GO:0006396
Mtr3g3822 1730 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 588 679 IPR005034 GO:0016891
Mtr3g3822 1730 CDD SF2_C_dicer 397 529 - -
Mtr3g3822 1730 Pfam Dicer dimerisation domain 588 674 - -
Mtr3g3822 1730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 404 564 IPR001650 -
Mtr3g3822 1730 Pfam PAZ domain 948 1075 IPR003100 GO:0005515
Mtr3g3822 1730 Gene3D - 48 283 IPR027417 -
Mtr3g3822 1730 CDD RIBOc 1309 1459 IPR000999 GO:0004525|GO:0006396
Mtr3g3822 1730 MobiDBLite consensus disorder prediction 1559 1596 - -
Mtr3g3822 1730 ProSiteProfiles Ribonuclease III family domain profile. 1293 1438 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3822 Mtr-Chr3 52040419 52053790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3822 419 520 Eukaryotic Initiation Factors Gene Family AT1G72730 37.736 7.53e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3822 K11592 - gmx:100806831 2295.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3822 3 52040419 52053790 Mtr3g3822 3 52040419 52053790 ECH
Mtr4g4569 4 59736567 59746542 Mtr3g3822 3 52040419 52053790 ECH