Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3776 ATGAAGGGAATTAGAGTGAAAGAGGAAGAAACATTAGCATATGTCAGTGTTGTTGGTTCAACATCTTCATCTTCCTCTTCGTGTTCTAATCTTACTCCAAAACCAATGGAAGGGTTACATGAAATGGGTCCACCTCCATTTCTCACCAAAACCTTTGATGTTGTTGAAGATCCATCCACTGATTCGATTGTTTCATGGAGTGGAGCTCGTAACAGTTTCGTTGTTTGGGATCTTCATAAATTCTCCACTGCTATTTTACCTCGTTACTTCAAACACAGTAATTTCTCTAGTTTCGTTCGACAACTCAATACCTATGGTTTTAGAAAAGTTGATCCGGATCGATGGGAGTTTGCGAACGAAGGGTTTTTGGCTGGACAGAGGAACTTGTTGAAAACAATCAAGAGAAGAAGAAATTTGACACAATCACAAGCTATGCAGCAAGAAACCGGTGGTTCCTGTATTGAATTAGGGGAGTTTGGTCTTGAAGGTGAGATTGAGAGGTTGAGAAGGGATAGGGCTGTTTTGATGGCTGAAATTGTGAAGTTAAGGCAGCAGCAGCATAATTCAAGGGAGCAATTATCTGCTATGGAAGCTAGGTTGTTGGTTACTGAGAAGAAACATCAACAGATGATGAATTTCCTTGCAAAAGCACTCAGCAATCAATCTTTTATACAACAATTGGCACAGAATAGAGAGTTGAAAGGCGTTGAAATGAAGCGAAAACGGAGGCTCACAGCTAGTTTGAGTTTGGAGAATTTGCAAAATGATTCTGGAGCTATAAGGGCTGTGCCAATTGAATCTGTGGTTGATTACTCTTGTCAAGAACAGCAAGAGGGTTTGACTACTATTGAGTCTGAGATGGAGACACTGTTAAGTGCTTATGATAATGAATCAAGCAGTGAAGTTAAGGACTACACTGCATTGAGTTCAGTTCCAACTGGTAATGAGAGTAATTTGGGTGATGCTGTGTGGGAGGATTTACTGAACCAAGAGTTGGTGGGTGGGAATCCAGAAGATGAAGTTGTGATTGGTGATTTCTCTCAAATTGATGTGCCTGTGGAGGATTTGGTAGAAAAGAATGATAATTGGACTGTGGATTTGCAGAAACTTGTTGATCAAATGGGTTTTGAACCTTAG 1137 0.4037 MKGIRVKEEETLAYVSVVGSTSSSSSSCSNLTPKPMEGLHEMGPPPFLTKTFDVVEDPSTDSIVSWSGARNSFVVWDLHKFSTAILPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRNLLKTIKRRRNLTQSQAMQQETGGSCIELGEFGLEGEIERLRRDRAVLMAEIVKLRQQQHNSREQLSAMEARLLVTEKKHQQMMNFLAKALSNQSFIQQLAQNRELKGVEMKRKRRLTASLSLENLQNDSGAIRAVPIESVVDYSCQEQQEGLTTIESEMETLLSAYDNESSSEVKDYTALSSVPTGNESNLGDAVWEDLLNQELVGGNPEDEVVIGDFSQIDVPVEDLVEKNDNWTVDLQKLVDQMGFEP* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3776 378 Gene3D - 40 137 IPR036388 -
Mtr3g3776 378 SMART hsfneu3 43 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr3g3776 378 PRINTS Heat shock factor (HSF) domain signature 47 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr3g3776 378 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr3g3776 378 PRINTS Heat shock factor (HSF) domain signature 98 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr3g3776 378 SUPERFAMILY "Winged helix" DNA-binding domain 43 136 IPR036390 -
Mtr3g3776 378 Coils Coil 353 373 - -
Mtr3g3776 378 Pfam HSF-type DNA-binding 47 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr3g3776 378 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Mtr3g3776 378 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 333 IPR027725 -
Mtr3g3776 378 Coils Coil 165 199 - -
Mtr3g3776 378 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 19 333 - -
Mtr3g3776 378 ProSitePatterns HSF-type DNA-binding domain signature. 86 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3776 Mtr-Chr3 51623570 51626411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3776 33 376 HSF AT2G26150 52.691 3.03e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr3g3776 HSF_DNA-bind 3.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3776 K09419 - gmx:100794605 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3776 3 51623570 51626411 Mtr3g3776 3 51623570 51626411 ECH