Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3761 ATGGAGAGATATATGCTACCTGGGTTGAAATCCCAAATCGAAGAAGAGTGTTACATGAACAATATACCACCTTTTACCGAAGAACTTATCCCAAATCTTCAAAACCACACTCAACAACAAAACATTGTTGGTCCTTCAGACCCAAATACTTCTGGTTTTAGGCACCATTTAGGTTCCTCATTTTCTTTGCCATCGCCCAAATCCAATTTCTCAAATCTACCGAATATTAATGACAATATCAACATCACTAGCACCACCATTACCAACAATCCATTTGGTAATGTCTTCAATTTAGATTCCCACGATGTTTTTCAACCTCCATTATCAGTTGAGCAATTAACCTCAATATGGTTGAAGGAGTTTGAGAATAAGGCGGAAAAAGATGGAAATGAAGAGGTTGGCGGAGGATCGAATCATGACTCCAATGAGAGTGTTGGTGTTGGAAAGATGGGGAACCATGGGAAAAACGAGGGAAATAATTATAATGCAAATAACAATGTTGGCGGTAGCAATAATAACATCATAGATAATAATGATGAGGAAAATTGTGTTATTAATGGGAACCGAAAAGGGAAGAAAAAGAAAACTCCATCAAAGAGTCTCATCGCTGAGAAGAAGCGAAGGCAGAAACTCAGTGATAATATGCACAAGCTTCGTTCTGTTGTACCAAAGATTACCAAGATGGACAAAATTTCAATACTTGGGGATGCTGTAAACTACTTGAATGAGTTAAAAGAACAAATTAATGATCTTCAAAGTGAGATAGCGTCAAGTTCTCCAAGATCATTTATGCCACCGCCTACAGGAACTCACATTATGACATCTACCATGTCAGCCCTTCCAGTTCAAATGAAAGAAAAGTTATGTCCTAACAATGTGTCAGGTCTTAAAAACCAACCAACAAAGGTAGATGTTAGGGTAAGGGAAGAGGGAATTGTCAACATCCATATGTTTTGTGCCAACAAACCAGGTGTTTTGGCATCGATTATGAAGGCATTGGATAGCCTTGGATTGGATGTTCACCAGGCTAACATAAGCTGTTTTAATGATTTTTCTCTAGATGTGTTCAAAGCTGAGCAACACAGCAAAGACCAAGAATTGACCCCCGTACAAATTAAAGCATTATTGTTGAAGGCATTGGATTTTCATTGA 1152 0.3811 MERYMLPGLKSQIEEECYMNNIPPFTEELIPNLQNHTQQQNIVGPSDPNTSGFRHHLGSSFSLPSPKSNFSNLPNINDNINITSTTITNNPFGNVFNLDSHDVFQPPLSVEQLTSIWLKEFENKAEKDGNEEVGGGSNHDSNESVGVGKMGNHGKNEGNNYNANNNVGGSNNNIIDNNDEENCVINGNRKGKKKKTPSKSLIAEKKRRQKLSDNMHKLRSVVPKITKMDKISILGDAVNYLNELKEQINDLQSEIASSSPRSFMPPPTGTHIMTSTMSALPVQMKEKLCPNNVSGLKNQPTKVDVRVREEGIVNIHMFCANKPGVLASIMKALDSLGLDVHQANISCFNDFSLDVFKAEQHSKDQELTPVQIKALLLKALDFH* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3761 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Mtr3g3761 383 Coils Coil 234 254 - -
Mtr3g3761 383 Pfam Helix-loop-helix DNA-binding domain 202 244 IPR011598 GO:0046983
Mtr3g3761 383 ProSiteProfiles ACT domain profile. 314 383 IPR002912 -
Mtr3g3761 383 Gene3D - 186 259 IPR036638 GO:0046983
Mtr3g3761 383 MobiDBLite consensus disorder prediction 180 199 - -
Mtr3g3761 383 SMART finulus 201 250 IPR011598 GO:0046983
Mtr3g3761 383 PANTHER TRANSCRIPTION FACTOR SCREAM2 28 383 - -
Mtr3g3761 383 MobiDBLite consensus disorder prediction 155 174 - -
Mtr3g3761 383 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 28 383 - -
Mtr3g3761 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 261 IPR036638 GO:0046983
Mtr3g3761 383 MobiDBLite consensus disorder prediction 127 174 - -
Mtr3g3761 383 SUPERFAMILY ACT-like 312 362 IPR045865 -
Mtr3g3761 383 CDD ACT_UUR-ACR-like 315 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3761 Mtr-Chr3 51413448 51418810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3761 197 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 55.215 4.00e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr3g3761 HLH 4.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3761 - - mtr:MTR_3g104100 676.011