Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3751 ATGATCAAAATTCCAAACCTTAAAATCCCTGAGTGGAACACAACACAATACGAGGAAGTAACATTCTCCAACCATTTCATTTCAAACGACATAGACATACACACTTCATGCATGACTGAAGATTTCGACTTACCAATCCATGTTTTCTCAACTGACCAATTCCGAATGTTCGAATTCAAGGTTCGAAAATGCCAACGTGGTAGGTCCCATGACTGGACGGACTGTCCATACTCTCATCCCGGTGAAAAAGCTCGCCGGAGAGACCCTCAAAAATACAATTATTCCGGCAATCCTTGCCCGGAGTTTCGCAAATTAGGAAACTGCACCAAAGGTGATTCTTGCCACTTCGCTCATGGTGTTTTTGAATGCTGGCTTCATCCTTCTCGTTACAGAACTCAGCTTTGTAACGACGGAACCCTTTGCCGGAGACGAGTTTGTTTCTTTGCTCATACCATTGATCAACTCCGTGTCTCAAATAACGCTTCACCGGAATCATTTGTTTCATCTCCTACCTCAGTTCTTGATTCTTCTCCAAGAAAATCTCGATACGGTGTCCCACCGGTGAACGTGAGGGAATTAGTTGGCTTCATGAGGAGTGTTAGGGTTGATGAATGGAGTCCGGTGTCTAAGATGGGTTCTGTGTTTGGTTCTCCACGACCACGAGGTGGTTTTTTGAGTCTTCCATCAAACTATGAAGGGGTTGGTATGGAGAGGGTGGAATCAGGAAGAGATCTTAGAGCCAAAATCTATGAGAAATTTGGTAGGTTGAACTCAAACGATGGTGTTGTTTCGGTCCCTGTCCCTGATATTGGATGGGTTGCGGAACTTGTTAACTGA 837 0.4444 MIKIPNLKIPEWNTTQYEEVTFSNHFISNDIDIHTSCMTEDFDLPIHVFSTDQFRMFEFKVRKCQRGRSHDWTDCPYSHPGEKARRRDPQKYNYSGNPCPEFRKLGNCTKGDSCHFAHGVFECWLHPSRYRTQLCNDGTLCRRRVCFFAHTIDQLRVSNNASPESFVSSPTSVLDSSPRKSRYGVPPVNVRELVGFMRSVRVDEWSPVSKMGSVFGSPRPRGGFLSLPSNYEGVGMERVESGRDLRAKIYEKFGRLNSNDGVVSVPVPDIGWVAELVN* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3751 278 PANTHER UNKEMPT FAMILY MEMBER 19 278 IPR045234 -
Mtr3g3751 278 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 19 278 - -
Mtr3g3751 278 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Mtr3g3751 278 SUPERFAMILY CCCH zinc finger 92 123 IPR036855 GO:0046872
Mtr3g3751 278 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 119 IPR000571 GO:0046872
Mtr3g3751 278 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Mtr3g3751 278 SMART c3hfinal6 129 152 IPR000571 GO:0046872
Mtr3g3751 278 Gene3D - 88 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3751 Mtr-Chr3 51346273 51347646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3751 43 156 C2H2 Transcription Factor Family AT5G12850 62.281 5.80e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr3g3751 zf-CCCH 2.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3751 - K23048 mtr:MTR_3g103960 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3751 3 51346273 51347646 Mtr3g3751 3 51346273 51347646 ECH