Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3749 ATGCGTCAAATATTTAAATATTCAAACATTCTCATGAACACAATGAATTTTGATATTTCTCTTGGTCTTGGTCTTGGTCTTGGTCTTGGTCTTGGCCTCCATGAACAAAGACATAAACAAAGCAAGAAGATTAAGGAGGAAGAGGAGGAGGATCCATGTAATAAGGTAGAGCCATATTCTCTTACGTTAGGAGTTGGATCAGCTGCTGATAATATTGATGAGAGAAATATTCATCATCAAGTAGCTACTACAACAAAGACTGAATCGGATGATTTTATTTATAATTTGCATCAACGTGCCTCTAATTCTACTAGCGTGATGTCTTCATTTTCCAACTCCTCTAATAGCATCAAGAGGGAGAGAAATGAAGTCCATGAGCCAGAGAAGATTTCATTTGTTGATGTTGATGATGTAAATGATAACCCCATTAGGAAGAAACTTAGGCTTACCAAAGAACAATCTGCAGTCTTGGAGGACACCTTCAAAGATCATTCTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAAGCAAGCTGAATCTTGGGACGAGACAAGTGGAGGTGTGGTTTCAGAACAGGAGGGCAAGGACAAAGGTGAAACAAACAGAAGTGGACTGTGAGGCACTGAAGCATTGTTATGAAACTCTAACAGAAGAGAACAGGAGGCTGGAAGAGGAGTTGAAAGAGCTTAAGTCCATGAAAACCGTAAATAATTACATGCAGCTTCCGGTTGCCAGTCTTACAGCTTGCCCTTCTTGTAAAAGAATTTGCACCGGCACCGGCACCGGCACCAGCGATGAGAATGGCTCCTCTCACACCACGGCTTTGATTCTATGCCCAAAGGCCCAAATTCACTTCTATGCAAATAATAATAACTATACGTTCACCCAATCTTCTGCAACTATTGCTAGCTAG 915 0.4098 MRQIFKYSNILMNTMNFDISLGLGLGLGLGLGLHEQRHKQSKKIKEEEEEDPCNKVEPYSLTLGVGSAADNIDERNIHHQVATTTKTESDDFIYNLHQRASNSTSVMSSFSNSSNSIKRERNEVHEPEKISFVDVDDVNDNPIRKKLRLTKEQSAVLEDTFKDHSTLNPKQKQELASKLNLGTRQVEVWFQNRRARTKVKQTEVDCEALKHCYETLTEENRRLEEELKELKSMKTVNNYMQLPVASLTACPSCKRICTGTGTGTSDENGSSHTTALILCPKAQIHFYANNNNYTFTQSSATIAS* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3749 304 Coils Coil 206 236 - -
Mtr3g3749 304 Pfam Homeobox associated leucine zipper 200 234 IPR003106 GO:0006355|GO:0043565
Mtr3g3749 304 SMART halz 200 242 IPR003106 GO:0006355|GO:0043565
Mtr3g3749 304 ProSitePatterns 'Homeobox' domain signature. 175 198 IPR017970 GO:0000981|GO:0006355
Mtr3g3749 304 Pfam Homeodomain 144 198 IPR001356 GO:0003677
Mtr3g3749 304 Gene3D - 138 205 - -
Mtr3g3749 304 CDD homeodomain 144 201 IPR001356 GO:0003677
Mtr3g3749 304 SUPERFAMILY Homeodomain-like 141 208 IPR009057 -
Mtr3g3749 304 ProSiteProfiles 'Homeobox' domain profile. 140 200 IPR001356 GO:0003677
Mtr3g3749 304 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 10 304 - -
Mtr3g3749 304 SMART HOX_1 142 204 IPR001356 GO:0003677
Mtr3g3749 304 PANTHER - 10 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3749 Mtr-Chr3 51326746 51328574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3749 134 256 Homeobox Transcription Factor Family AT4G37790 68.548 2.60e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr3g3749 Homeodomain 1.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3749 K09338 - gmx:100790927 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3749 3 51326746 51328574 Mtr3g3749 3 51326746 51328574 ECH