Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3736 ATGAATTTCAAAATGGATTCTGATAAAGCCAAGCTCTTCGTAGGTGGCATTTCTCGCGAAACCACTGAAGACACTCTCAAACACCATTTCACCAAATACGGTGACGTTTTGCACTCCACCATCTCTTTTGACCGCACCACCCGAATCCCTAGAGGTTTCGGTTTCGTTACTTTCTCTGATATCTCTTCTGCTCACAATGCCCTTCAAGATACCCATGCCATTCTTGGACGAAAGGTAGAAGTTAGGAAAGCAATACCGAGAAGTGAACAGCTACAACAAAATCAATTACAGAATAGAGGGGGGAATAGCTATAGTGGTTATGAATGTGGGAATGAACATATTAGGACTAAGAAGATTTTTGTCGGTGGTTTACCTGCTAATATGTCTGTGGAGGAGTTTAAGAGGTACTTTGAGAGGTTTGGTCGAATAACTGATGTGGTGGTGATGCAAGATAGTTTAACTCATAGGCCGAGGGGGTTTGGGTTTATTACTTTTGATTCTGAAGACTCGGTGCAAAGTGTTATGATGAGGAGTTTTCATGACTTGAATGGTAGGCAGGTGGAGGTTAAGAGGGCAGTTCCGAGGGAGGGGAATGCTGGTTCTGAGGGTTTTAGTAAAATAAGATATAAGAGTGACAGAGGAGCAGCAGCTGAAAGTTTTCACCATTCTAGTCCAGGGAACGTGTTTCCTGCAATTGCTCCTTTACCTTTGTCTACTAGTGATGGAGTATATGGGTACGGATCAAATCCCTATGGTTGCTGGTATCCTATGGGTGGGTATGCGTATGGGGGGAATGGATATGCAGCTCCATCAGATGTTTATAGGAACTTATGGTATGGTGGGCAAATGGTAACTGGTCCCCAGGCTTATCAACAGGTGCCTTATGCTAATGTTATGCCAACTGTTGCATATGTAGGTGGTAGTGTTGGAATAGTAGGTAGTGGTGCCGGAAATTGGGGGTACAATTCCATTCTTGCGTCTGCAACAAATTATAAATTTGACCAGCCTCTTATTACCAATGGATTTGTTCCATTCAATATGCCATCGCCTCATGGTGTAAAGCAGATTGTTGGTGCTTCAAGTTTTAAAGGAAGCAATGGTGAAATCTCCAGTTGA 1116 0.431 MNFKMDSDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQDTHAILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNGRQVEVKRAVPREGNAGSEGFSKIRYKSDRGAAAESFHHSSPGNVFPAIAPLPLSTSDGVYGYGSNPYGCWYPMGGYAYGGNGYAAPSDVYRNLWYGGQMVTGPQAYQQVPYANVMPTVAYVGGSVGIVGSGAGNWGYNSILASATNYKFDQPLITNGFVPFNMPSPHGVKQIVGASSFKGSNGEISS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3736 371 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 360 - -
Mtr3g3736 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 175 IPR000504 GO:0003723
Mtr3g3736 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 73 IPR000504 GO:0003723
Mtr3g3736 371 Gene3D - 2 114 IPR012677 -
Mtr3g3736 371 SUPERFAMILY RNA-binding domain, RBD 115 202 IPR035979 GO:0003676
Mtr3g3736 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Mtr3g3736 371 Gene3D - 115 204 IPR012677 -
Mtr3g3736 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Mtr3g3736 371 SMART rrm1_1 118 190 IPR000504 GO:0003723
Mtr3g3736 371 SMART rrm1_1 11 82 IPR000504 GO:0003723
Mtr3g3736 371 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 360 - -
Mtr3g3736 371 SUPERFAMILY RNA-binding domain, RBD 6 109 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3736 Mtr-Chr3 51168711 51170458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3736 6 265 Eukaryotic Initiation Factors Gene Family AT3G16380 26.692 4.00e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3736 K14411 - gmx:100786665 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3736 3 51168711 51170458 Mtr3g3736 3 51168711 51170458 ECH