Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3719 ATGGATTCTCGTTCACTACCTCCTGATATCAACATAGTACCTGAGCATTGTCCAGAAGCTGTAAGAGAATGGTACCGCTTAACAGGACTACATGATCCTAAAGAAAGTGCTGGTAGAAAGGATTTGACTTTGAAAGCAAAACAACATCTTCTTTCTTTGGGTTGGAAGTTATGGTACATTGACAAAAATGGTAAGCGGGAATTGCGTTATACTTCTCCTAACAATGGGAAAAACCATATTACTCTTAAAAAAGCCTGCAAGAGTTGCATTGAAGAAGGAGGGTGTTCCCTCAAACACCCTTCAACTCCAGCACCAGTAACAGCAGCAACAATAATTTCTTTGTCTCCATCACAGTCGAAAAAGCGTCCTAGAGAATCCGAGGAAGCTGGAGCTAGAGCATTTTCTTTTTCTCAACTACAGCCGACGGAGCGACAGAGAAAATCTGAGGAAACAGCAGCAACATCAATTTATTCGTCCTGTTTACTTTCTGAAGAGCAACCGAGAGAATCCGAGGAAGAAGTGACAACAACATCAATATATTGGTCTCCATTACAGTCGAATGAGCAACTGAGAGAATCCGTGGAAGCAGCAGCAACAACAACAATTTCTTTGTCTCCATTACAGTCGAAAGAGCGACTGAGAGAATCTGAGGAAGCAGCAGCAATATCAATATATTCATCTCCATTACAGCTGAAAGTGCAACCGAAGGAATCCGAGGTATCAGTAGCAAGAGGATTTTCTTTGTCTCCATTTCAGTCGATTGAGCGACTGAGAGCATCTGATGAAGCAGCAGCAACAACAATTTCTTCGTCTCCATTACAGTTGAAAGAGCAACCGAGAGAATCTGAGGAAGCATTAGTAAGAGCATTTTACTTGTCTCCATTACAGTCGAAAGAGCGACTGCGAGAATGCGAGGAAGCAGCAGCAACATTAATTTATTCGTTTCCATTACAGATAAAAGAGCAATGGAGAGAATCTGATGAAGCAGCATCAAAAACAATTTCTCTGTCTCCATTACAGCCGAAAAAGCAACCAAATGAATCCGAGGAAGCAGCAGCAATAGCAATGTCTTTGAAATCCTTTGAATTTACTTCTAATGAGGATTCTGAAGCCTCTAGTTTCATTTCTGTTAAAAAAGCCACGGTTACTACATTATCAACATCAACGGAAAATGAGAAGCATGTGATTCAATCTAAACCAGAAGTTACTAATTCGGTGGGTAGTGGTAAAAGAGGGAAGGTATTAAAGAGAGAAGGTATAAGGGAAAGGTATTCACTTGTTTCTTGGTTGATAAAGAATAAAGTTTTGGTTTCAGGGACTAATGTGCTCTGTCGTGGTAGTAACAATGTTGTTACAAGCGGGAGTATATATTGTGATGGTATTGTTTGTGATTGTTGTAATGTTAATTTCACTCTCGCTGGATTTAAGGATCATGCTGGTTGTACAAGACCTACATCATCCACTGGTATCTTCTTGGAAGATGGAAGGTCGTTGTTGGAATGTCAAAGGGAAGCTATGAGTTCACGTGATCAAAATGATAATCATTGTATTGCCGAAGCAAACTATGAAGCAAATAATGATACTGTTTGTTCTATTTGTGGTTTTGGACGTGACATAGTACTATGTGATCGATGTCCTTCTGCATTCCACCTCAGTTGTTTAGATCTTGATCGAGTTCCGGATGGTGATTGGTTCTGTCCAACTTGTTGTTGCAAAATATGTTGTCGACCTAAATGTAAACAAGAATGTACAGATACCAATGATAACAATATTCTTGTTTGTGTTCAATGTGAGCAGAAATTTCACTTTGGGTGTGTAAAGGCAACAGGATATGAATCTAGTCACATGGAGAGTAATGTTAAAAAGAAGAATTGGTTTTGCAATATAGTTTGCGTGAACAGGTTCATATGTCTAAAGAAGCTATTGTGGAAACCAATTAAGGTTGCAGACAATCTAACTTGGACACTGTTGAAGAATGTGAATAGTGATGATGATGGCAGAGATTTTTCTTCTGATGAGTTTAGTCAAAAGAAGCGTAAGTTAAATGTGGCTCTTCATGTATTGTATGAGAGTTTTTATCCAACTATTGATGCTTTATCTGGAAGAGAGTTGATTAGAGACATTGTTTTTAGTAGAGACTCGGTACATAAGCGCTTGAACTTTTGTGGTTTCTATAATGTGATTTTGGAGAAAATGGAGGAAGTGATTTCGGTGGCTACTATAAGGATTTATGGTCACAAGGTTGCTGAGATAGTTTTCTTGGCCACCAAGAAAGAACATCGAGGACAAGGAATGTGTCGTTTGTTGATGGATGAACTTGAGAAACAATTGACTCGCTTAGGAGTAGAAAGCATGGTTTTGCATTCATCCGAGGATGCTATAGACACATGGACAAAATCTTTTGGTTTTGAGAGGATGACAGGTAAAGACAAGCGTCAATTTGTTGATATTACTTTCTTAGAATTTCAGGACACTGTCATGTGCCTTAAACCACTGAAGAAACCTAAATGGCCTTACACTGCGTGGCTGTAG 2532 0.3918 MDSRSLPPDINIVPEHCPEAVREWYRLTGLHDPKESAGRKDLTLKAKQHLLSLGWKLWYIDKNGKRELRYTSPNNGKNHITLKKACKSCIEEGGCSLKHPSTPAPVTAATIISLSPSQSKKRPRESEEAGARAFSFSQLQPTERQRKSEETAATSIYSSCLLSEEQPRESEEEVTTTSIYWSPLQSNEQLRESVEAAATTTISLSPLQSKERLRESEEAAAISIYSSPLQLKVQPKESEVSVARGFSLSPFQSIERLRASDEAAATTISSSPLQLKEQPRESEEALVRAFYLSPLQSKERLRECEEAAATLIYSFPLQIKEQWRESDEAASKTISLSPLQPKKQPNESEEAAAIAMSLKSFEFTSNEDSEASSFISVKKATVTTLSTSTENEKHVIQSKPEVTNSVGSGKRGKVLKREGIRERYSLVSWLIKNKVLVSGTNVLCRGSNNVVTSGSIYCDGIVCDCCNVNFTLAGFKDHAGCTRPTSSTGIFLEDGRSLLECQREAMSSRDQNDNHCIAEANYEANNDTVCSICGFGRDIVLCDRCPSAFHLSCLDLDRVPDGDWFCPTCCCKICCRPKCKQECTDTNDNNILVCVQCEQKFHFGCVKATGYESSHMESNVKKKNWFCNIVCVNRFICLKKLLWKPIKVADNLTWTLLKNVNSDDDGRDFSSDEFSQKKRKLNVALHVLYESFYPTIDALSGRELIRDIVFSRDSVHKRLNFCGFYNVILEKMEEVISVATIRIYGHKVAEIVFLATKKEHRGQGMCRLLMDELEKQLTRLGVESMVLHSSEDAIDTWTKSFGFERMTGKDKRQFVDITFLEFQDTVMCLKPLKKPKWPYTAWL* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3719 843 CDD NAT_SF 727 788 - -
Mtr3g3719 843 ProSiteProfiles Zinc finger PHD-type profile. 527 572 IPR019787 -
Mtr3g3719 843 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 711 805 IPR016181 -
Mtr3g3719 843 MobiDBLite consensus disorder prediction 391 405 - -
Mtr3g3719 843 MobiDBLite consensus disorder prediction 391 410 - -
Mtr3g3719 843 SUPERFAMILY FYVE/PHD zinc finger 520 580 IPR011011 -
Mtr3g3719 843 MobiDBLite consensus disorder prediction 114 151 - -
Mtr3g3719 843 Pfam PHD-finger 529 571 IPR019787 -
Mtr3g3719 843 MobiDBLite consensus disorder prediction 332 351 - -
Mtr3g3719 843 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 687 821 IPR000182 GO:0016407
Mtr3g3719 843 Gene3D - 684 818 - -
Mtr3g3719 843 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 836 - -
Mtr3g3719 843 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 9 836 - -
Mtr3g3719 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 520 572 IPR013083 -
Mtr3g3719 843 SMART PHD_3 574 631 IPR001965 -
Mtr3g3719 843 SMART PHD_3 529 570 IPR001965 -
Mtr3g3719 843 Pfam Tify domain binding domain 454 505 IPR032308 -
Mtr3g3719 843 Pfam Acetyltransferase (GNAT) family 712 803 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3719 Mtr-Chr3 50982109 50984640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3719 394 780 PHD Transcription Factor Family AT5G58610 38.213 1.41e-80 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr3g3719 Acetyltransf_1 3.8e-11 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3719 - - mtr:MTR_3g103120 1660.2