Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3688 ATGGACGACTCCAGTGACCGGTTTCCAATCGGAATGCGTGTTCTCGCCGTCGACGGCGATTCCACTCATCTCTCGGATTTAGAAACTCGTCTCCGATCATGTCAATACCACGTAACGACAACTAGTCAAGCAAAAACGGCATTGACTATGTTGCGAGAAAACAAAGACAAGTTTGACCTGGTAATCGCTGATGTGCACCTGCCTGACATGGATGGACTTAAGCTGCTTGAACTTGTGGAACTTGAGACGGACCTTCCGGTCGTCGTAATGTTGTCTGAATCTAGCGATAATGAGCTAGTGATGAAGGCAGTTTTCCATGGTGCCTCTGATTTTCTGGTGAAACCTGTGAGATTACAGGAGCTAAAGACCATTTGGCAGCATGTAATTCGGAAGAAGAAGGACAATGAGGACCTATCAGCTCAGAAGAAGTCCCAGTCTGTTTGGTCTGTGGAGCTGCACCACAAATTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAGGCTGTACCTGAAAAGATTCTTGGTTTGATGAATGTTGAAAATATTACAAGGGAGGACGTGGCGAGCCATCTCCGGAAGTATAGACTTATTGACTATGTGAAGAAAGTTAGCTCTGTGGCAAACCAACATGCTAGTAGTTTGGTGGCAGCCTCAAGGAGTGCAGATCAGGATGAAGACAAAGATGAGGATAAAGAGAATGGTCATGACAATGAGGACCCATGA 723 0.4564 MDDSSDRFPIGMRVLAVDGDSTHLSDLETRLRSCQYHVTTTSQAKTALTMLRENKDKFDLVIADVHLPDMDGLKLLELVELETDLPVVVMLSESSDNELVMKAVFHGASDFLVKPVRLQELKTIWQHVIRKKKDNEDLSAQKKSQSVWSVELHHKFVAAVNQLGIDKAVPEKILGLMNVENITREDVASHLRKYRLIDYVKKVSSVANQHASSLVAASRSADQDEDKDEDKENGHDNEDP* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3688 240 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 134 IPR045279 GO:0009736
Mtr3g3688 240 PANTHER TWO-COMPONENT RESPONSE REGULATOR 133 210 IPR045279 GO:0009736
Mtr3g3688 240 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 4 134 - -
Mtr3g3688 240 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 133 210 - -
Mtr3g3688 240 MobiDBLite consensus disorder prediction 220 240 - -
Mtr3g3688 240 SUPERFAMILY CheY-like 11 143 IPR011006 -
Mtr3g3688 240 MobiDBLite consensus disorder prediction 211 240 - -
Mtr3g3688 240 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 143 197 IPR006447 GO:0003677
Mtr3g3688 240 Gene3D - 147 197 - -
Mtr3g3688 240 Pfam Response regulator receiver domain 14 124 IPR001789 GO:0000160
Mtr3g3688 240 Pfam Myb-like DNA-binding domain 147 195 IPR001005 -
Mtr3g3688 240 SUPERFAMILY Homeodomain-like 141 196 IPR009057 -
Mtr3g3688 240 SMART REC_2 12 125 IPR001789 GO:0000160
Mtr3g3688 240 CDD REC_typeB_ARR-like 14 129 - -
Mtr3g3688 240 Gene3D - 11 146 - -
Mtr3g3688 240 ProSiteProfiles Response regulatory domain profile. 13 129 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3688 Mtr-Chr3 50729290 50731294 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3688 6 211 Response Regulator Gene Family AT2G25180 55.118 6.80e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr3g3688 Response_reg 6.4e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3688 - K14491 mtr:MTR_3g102590 454.521